Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D17
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical ...    32   0.62 
Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical ...    29   5.8  
AC006663-2|AAF39900.2|  603|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical
           protein F37B4.7 protein.
          Length = 424

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 706 IDWRKGVRRSLSQNDVMSYFMEDVDLNTYMYYLHM 810
           ++W++   + L  N+V     E VD ++YM YL M
Sbjct: 183 VEWKEAYEKKLEDNNVQGNLKEIVDQSSYMDYLRM 217


>Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical
           protein F14F3.3 protein.
          Length = 453

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 222 ILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVK-QFMEMYKMGMLPRGETFVHTNELQME 398
           I+ PT      ++    NIE S D  +N+D+ K +F + ++ GM     +      L + 
Sbjct: 272 IMGPTDLNAFDKLKTRENIEMSSDAIVNLDIPKVEFSDGFRDGMKAWNRSVQTWLALYVH 331

Query: 399 EAVKVFRV 422
             VKV RV
Sbjct: 332 SRVKVMRV 339


>Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical
           protein F49A5.7 protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +1

Query: 484 STEACSSTLLLPRASTEPTARVS-TCPLLTRSIPTSSLTAMSSVKPL 621
           + EA SST LL   ST  TA +S T   ++RSI   + TA ++++PL
Sbjct: 91  TNEASSSTKLL---STSSTAEISSTTRTVSRSIKPETSTASTTIRPL 134


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 464 RSPHENIEVLSVVEDSEDFD 405
           R+P+ENI++L   +DSED D
Sbjct: 581 RAPYENIDLLLSTDDSEDID 600


>AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical
           protein K07D4.6 protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +1

Query: 481 GSTEACSS---TLLLPRASTEPTARVSTCPLLTRSIPTSSLTAMSSVKPL**R*LKPPRT 651
           G+TE  S+   T      +TEPT   ST    T ++PTS+ T  ++             T
Sbjct: 257 GTTEETSTEPETTTTSTTTTEPTTTTSTTTQTTTTVPTSTSTISTT--------STTTTT 308

Query: 652 RSSGNTTASRVTDDNLV 702
            ++  TT S  T D+L+
Sbjct: 309 PTTTTTTTSTTTSDDLL 325


>AC006663-2|AAF39900.2|  603|Caenorhabditis elegans Hypothetical
           protein H24K24.4 protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -2

Query: 730 GGLPYASQSLPNCRQ*PVMP*YFQRTGSLAALVIF 626
           GG PY  +SL +CR     P +FQ T S AA V++
Sbjct: 332 GGTPYIYESLLDCRFRVSPPAFFQ-TNSQAAAVLY 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,373,852
Number of Sequences: 27780
Number of extensions: 335908
Number of successful extensions: 853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)