Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D15
         (1003 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.1  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   3.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   4.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.5  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 29/96 (30%), Positives = 30/96 (31%)
 Frame = +1

Query: 400 GGGGLXFGXXSXSPPPXXPAPGRXXGAXWFXXXXXGGXGXXPXXGGXSXGAPXXLPXXPP 579
           GGG   FG  S  PP   P PG   G   F     GG G      G   G P       P
Sbjct: 187 GGGFGGFGGGSGGPP---PGPGGFGGFGGF-----GGEGHHHGGHGGFGGGPGGFEGG-P 237

Query: 580 KGRGXXXGXXLVGXSPWGPXPXXXLXXXGXPPXRGW 687
            G G   G    G   +G  P       G     GW
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPGW 273


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 731 PPGGXPPXGXPPGPXPP 781
           PPG  PP   PPG  PP
Sbjct: 5   PPGNPPPPPPPPGFEPP 21



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 749 PXGXPPGPXPPXRXSGXSXXPPFSP 823
           P G PP P PP      S  PP  P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 734 PGGXPPXGXPPGPXPPXRXSGXSXXPPFSP 823
           P   P  G PP P PP   +G    PP  P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 669 PPXPGVGXXPXRAXXGXPGVSPRGA 743
           PP PG    P     G PG  P GA
Sbjct: 76  PPPPGAEGGPGAGFGGFPGAGPGGA 100


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 27/87 (31%), Positives = 28/87 (32%), Gaps = 10/87 (11%)
 Frame = +3

Query: 573  APXGXXPXXGGPXGGVXPXGPX--PPGPXXXXWXPPXP--GVGXXPXRAXXGXPGV---- 728
            AP    P    P G      P   PP P      PP P   V   P  A  G P V    
Sbjct: 1068 APSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPS 1127

Query: 729  --SPRGAXPXXAPXLVPXPPXGFPGXP 803
              +P    P  AP  VP P    P  P
Sbjct: 1128 VAAPPVPVPSGAPP-VPKPSVAAPPVP 1153



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 20/66 (30%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
 Frame = +3

Query: 624  PXGPXPPGPXXXXWXPPXP---GVGXXPXRAXXGXPGVSPRGAXPXXAPXLVPXP---PX 785
            P    PP P      PP P   G    P  +    P   P GA P   P +   P   P 
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPS 1156

Query: 786  GFPGXP 803
            G P  P
Sbjct: 1157 GAPPVP 1162


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 23/78 (29%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
 Frame = +3

Query: 576 PXGXXPXXGGPXGGVXPXGPXPPGPXXXXWXPPXPGVGXXPXRAXXGXPGVSPRGAXPXX 755
           P    P   G    + P    PPG       PP PG    P       P V P  A P  
Sbjct: 479 PSQNAPFIPGTSAPLPPTTFAPPGVPL----PPIPGAPGMPNLNMSQPPMVPPGMALPPG 534

Query: 756 APXLVPXPP--XGFPGXP 803
            P   P  P     PG P
Sbjct: 535 MPAPFPGYPAVPAMPGIP 552


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
 Frame = -1

Query: 616 PPXGPPXX---GXXPXGAXXAXXXXPPGKXPP---XXGXPPXPPXXXXXTXXPXPR 467
           PP  PP     G  P G   +    PP   PP     G  P PP        P PR
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.152    0.544 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,266
Number of Sequences: 5004
Number of extensions: 28437
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)