Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D15
         (1003 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
 Frame = +2

Query: 665 GAPXXGGGXTPXXGXXXXXXGFPPGGX--PPXGXPPGPXPPXRXSGXSXXP 811
           GAP  G   +P         G PP     PP G PPG  P    S     P
Sbjct: 19  GAP--GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 24.2 bits (50), Expect = 1.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 376 PXKTSPPXPRTGNPKGXP 323
           P + SPP P  G P G P
Sbjct: 34  PQRGSPPNPSQGPPPGGP 51



 Score = 22.2 bits (45), Expect = 7.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 755 PXGGXPPGGNPXXP 714
           P  G PPGG P  P
Sbjct: 42  PSQGPPPGGPPGAP 55



 Score = 21.8 bits (44), Expect = 10.0
 Identities = 13/47 (27%), Positives = 14/47 (29%)
 Frame = +3

Query: 642 PGPXXXXWXPPXPGVGXXPXRAXXGXPGVSPRGAXPXXAPXLVPXPP 782
           PGP       P       P     G P   P GA P   P  +   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 440 GEXEXXPKXKPPPP 399
           G+ +  PK  PPPP
Sbjct: 333 GDSDTPPKPAPPPP 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.152    0.544 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,705
Number of Sequences: 438
Number of extensions: 5480
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33258225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)