Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D14
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   6.5  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   6.5  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         26   8.5  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/81 (19%), Positives = 35/81 (43%)
 Frame = +3

Query: 513 LVNSLFMKLGTEEQKKKYLTKLCTEYAGSFCLTEPSSGSDAFALKTVAKKEGEHYIISGS 692
           LVN+      + +++ + L   C +Y   +        +  +    VA    E+Y  +GS
Sbjct: 18  LVNAFAFDYASLQEQDENLLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS 77

Query: 693 KMWISNSDVAGVFLVMTNADP 755
           K   S+S ++   +  +++ P
Sbjct: 78  KSLSSSSILSNSTISTSSSTP 98


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 216 STXVTPRPLTMLTEXELAMRETIRKLATEQISPLVKKMEDE---HRIDD 353
           ST   PRP   LTE +   R       T  IS ++K + ++    RID+
Sbjct: 559 STGPRPRPTFQLTEIDSPNRRRASDCITPSISKILKMVSEDAKSQRIDE 607


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 545 RRTKKEIFNETLHGICWQFLSHRA-QLRIRC 634
           +++ K++FN  L G C   LSHR  Q  + C
Sbjct: 870 KKSIKDVFNVLLEGRCSLILSHRCFQYMVLC 900


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 348 RCGVHLPFSSQADLFVRSLVSVLFPSWRVXLLSAWS 241
           + GV   + +  + +V  +  VLF  W + L+S W+
Sbjct: 268 KTGVVAVWCTNKEKYVNFVKKVLFKKWNLTLVSTWT 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,601
Number of Sequences: 5004
Number of extensions: 58905
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)