Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_D14
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 113 1e-25
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 83 4e-16
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 80 2e-15
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 55 7e-08
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006... 46 4e-05
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 36 0.034
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 33 0.42
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478... 32 0.73
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768... 29 3.9
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 113 bits (273), Expect = 1e-25
Identities = 59/178 (33%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Frame = +3
Query: 273 RETIRKLATEQISPLVKKMEDEHRI--DDGIRQMLFDNGLMGIETPVEYSGSGCNFLTMM 446
+E++ K A E I+P ++ + D + +++ D L G+ P EY G G ++
Sbjct: 39 KESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNLHGLTAPEEYGGMGLGYMYHC 98
Query: 447 LVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSS 623
+ +EE+SR +V H+ L + ++ G+ QK KYL KL + E+ G+ ++EP+S
Sbjct: 99 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPNS 158
Query: 624 GSDAFALKTVAKKEGEHYIISGSKMWISNSDVAGVFLVMTNADPSXGYKGITCFIVER 797
GSD ++K A+K Y+I+G+KMW +N A +V D + G KGIT FI+E+
Sbjct: 159 GSDVVSMKCKAEKVDGGYVINGNKMWCTNGPSAQTLVVYAKTDIAAGSKGITAFIIEK 216
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 82.6 bits (195), Expect = 4e-16
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 1/185 (0%)
Frame = +3
Query: 246 MLTEXELAMRETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFDNGLMGIETPVEYSGSG 425
+LT E ++R+ +R + ++I+P++ ++ L G+ G T Y G
Sbjct: 49 LLTTEEQSIRKNVRAIMEKEIAPIMATYWEKAEFPFHAIPKLSSLGVAG-GTIKGYGCPG 107
Query: 426 CNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCTEYA-GSF 602
+ + + E++RVD + + ++ +H++L G+E QK+KYL L A G +
Sbjct: 108 LSITASAITMAEIARVDASCSTFILVHSSLAMVTIALCGSEVQKQKYLPSLAQLTAVGCW 167
Query: 603 CLTEPSSGSDAFALKTVAKKEGEHYIISGSKMWISNSDVAGVFLVMTNADPSXGYKGITC 782
LTEP+ GSDA +L T A K + I G K WI NS A V +V+ + K +
Sbjct: 168 ALTEPNHGSDASSLITTATKVPGGWHIDGQKRWIGNSTFADVLVVLAR---NANTKQLNG 224
Query: 783 FIVER 797
FIV +
Sbjct: 225 FIVRK 229
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 80.2 bits (189), Expect = 2e-15
Identities = 47/166 (28%), Positives = 88/166 (53%), Gaps = 1/166 (0%)
Frame = +3
Query: 246 MLTEXELAMRETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFDNGLMGIETPVEYSGSG 425
+LTE E ++ +R+ +++P++ K ++ + + G+ G T Y G
Sbjct: 60 LLTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMSTLGIAG-GTIKGYGCPG 118
Query: 426 CNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSF 602
+ + E++RVD ++A++ + + L +LG+E QK+KYL L + +
Sbjct: 119 LSGPACAMCFLEIARVDASIASFCLVQSCLAMVSIAQLGSEAQKEKYLRPLSKMQKVCVY 178
Query: 603 CLTEPSSGSDAFALKTVAKKEGEHYIISGSKMWISNSDVAGVFLVM 740
L+EP+ GSDA +L T A+K +I++G K W +NS A +F+V+
Sbjct: 179 ALSEPNHGSDASSLNTTARKVPGGWILNGQKRWPANSSFADIFVVL 224
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 55.2 bits (127), Expect = 7e-08
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Frame = +3
Query: 540 GTEEQKKKYLTKLCTEYA--GSFCLTEPSSGSDAFALKTVAKKEGEHYIISGSKMWISNS 713
G+E QK+KYL L T++ G + LTEP GSDA +L+T A K + + G K WI N
Sbjct: 123 GSEAQKQKYLPSL-TQFRTIGCWALTEPDYGSDASSLRTAATKVPGGWHLDGQKRWIGNG 181
Query: 714 DVAGVFLVMT-NAD 752
A V +++ N+D
Sbjct: 182 TFADVLIILARNSD 195
>07_03_1669 +
28499143-28499409,28499915-28500055,28500528-28500659,
28501185-28501373,28501503-28501580,28502267-28502386,
28502701-28502818,28503012-28503280,28503428-28503622,
28503737-28503879,28504096-28504180,28504270-28504479,
28504559-28504711,28504862-28504966,28505044-28505235
Length = 798
Score = 46.0 bits (104), Expect = 4e-05
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +3
Query: 525 LFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPS-SGSDAFALKTVAKKEGEHYIISGSKM 698
+ ++ GT+EQ+K++L L + F +TEP + SDA ++ ++G+ Y+I+G+K
Sbjct: 504 VLLRYGTKEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNIECSISRQGDFYVINGTKW 563
Query: 699 WISNS 713
W S +
Sbjct: 564 WTSGA 568
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 36.3 bits (80), Expect = 0.034
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Frame = +3
Query: 450 VVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSSG 626
V+E D ++ + + +L + LGT++ + ++ + +Y G F +TE G
Sbjct: 138 VMEAAGGADISLGVKLGVQYSLWGGSIINLGTKKHRDRFFDGIDNLDYPGCFAMTELHHG 197
Query: 627 SDAFALKTVAKKE--GEHYIIS-----GSKMWISNSDVAGVF 731
S+ AL+T A + + +II+ K WI N+ + G F
Sbjct: 198 SNVQALQTTATFDPVTDEFIINTPNDGAIKWWIGNAALHGKF 239
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 32.7 bits (71), Expect = 0.42
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 492 YVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSSGSDAFALKTVA 656
YVD+H + GTEEQ+KK+L + G + TE GS+ L+T A
Sbjct: 103 YVDLHWGMFVPAIKGQGTEEQQKKWLPLAYRFQIIGCYAQTELGHGSNVQGLETTA 158
>06_02_0320 -
14347195-14347443,14347573-14347674,14347747-14347851,
14347938-14348084,14348171-14348290,14348743-14348878,
14349198-14349328,14350854-14350928,14351040-14351139,
14351213-14351385,14351474-14351581,14351674-14351791,
14353477-14353970
Length = 685
Score = 31.9 bits (69), Expect = 0.73
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Frame = +3
Query: 474 DPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCTEYA--GSFCLTEPSSGSDAFALK 647
D ++A + +H L S LGT+ K+L+ Y G F +TE GS+ ++
Sbjct: 151 DHSLAIKIGVHFFLWGSAIKFLGTKRHHDKWLSDT-ENYVIKGCFSMTELGHGSNVRGIE 209
Query: 648 TVAKKE--GEHYII-----SGSKMWISN-SDVAGVFLVMTNADPSXGYKGITCFIVE-RE 800
TVA + ++I S K WI ++ A +V + +G+ F+ + R+
Sbjct: 210 TVATYDIKTREFVINTPCESAQKYWIGGAANHATHTIVFAQLHINGRNEGVHAFVAQIRD 269
Query: 801 XRASXLPSLK 830
+ +P+++
Sbjct: 270 EHENVMPNIQ 279
>10_04_0022 +
7687383-7687670,7688479-7688556,7689456-7689535,
7689876-7690095,7690444-7690677
Length = 299
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = +3
Query: 249 LTEXELAMR--ETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFD 377
L E ELA R E+IRK ++++ K E + R+++GI+Q LFD
Sbjct: 158 LLEEELARRVEESIRKNVEDRLNSEDIKNEIKRRVEEGIKQ-LFD 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,508,058
Number of Sequences: 37544
Number of extensions: 426841
Number of successful extensions: 1117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -