Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D14
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    28   0.14 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    27   0.18 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   1.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.7  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 494 RRHSQHLSQLSVHEARYRRTKKEIFNET-LHGI 589
           R+H+ H  QLS  +   RR  +++ N+T LHG+
Sbjct: 105 RKHAVHKEQLSREQRFLRRRLEQLTNQTGLHGL 137


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 612 EPSSGSDAFALKTVAKKEGEHYIISGSKMWISNS 713
           +P    +AFA    A K  E YI SG+K+ ++ S
Sbjct: 528 DPPENGEAFAQNLYAMKMNETYINSGNKISLATS 561


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 458 LHHQHHCQEI 429
           LHH HHC EI
Sbjct: 470 LHHWHHCPEI 479


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 516 VNSLFMKLGTEEQKKKYLTKLCTEYAGSFCLTEPSSGSDAFALKTVAKKEGEHY 677
           V SL M+  TE+ +      L    A    LT PS+   A AL  +  K  E +
Sbjct: 46  VTSLLMREETEDAEDTQTLNLKHLRAAVLVLTNPSNEVVAVALGALLSKGEESF 99


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 382 PLSNNICRIPSSMRCSSSIFFTSGLI 305
           P+  + C  P +  CS S  +T+G +
Sbjct: 158 PIPASCCNSPENNTCSISNSYTNGCV 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,101
Number of Sequences: 438
Number of extensions: 4134
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)