Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D14
         (911 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD) iden...   119   2e-27
At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical ...    79   4e-15
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac...    40   0.002
At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low simi...    40   0.002
At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to ac...    35   0.086
At3g06790.2 68416.m00807 plastid developmental protein DAG, puta...    31   1.1  
At1g27990.1 68414.m03428 expressed protein                             30   2.4  
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    29   3.2  
At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong simil...    29   5.7  
At3g11640.1 68416.m01427 expressed protein                             28   7.5  
At4g21370.1 68417.m03088 S-locus protein kinase, putative simila...    28   9.9  

>At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD)
           identical to isovaleryl-CoA-dehydrogenase precursor
           [Arabidopsis thaliana] GI:5596622
          Length = 409

 Score =  119 bits (287), Expect = 2e-27
 Identities = 61/187 (32%), Positives = 105/187 (56%), Gaps = 3/187 (1%)
 Frame = +3

Query: 246 MLTEXELAMRETIRKLATEQISPLVKKMEDEHRI--DDGIRQMLFDNGLMGIETPVEYSG 419
           +  + +L  +E++ K A + I+P  ++++  +    D  + +++ +  L GI  P EY G
Sbjct: 30  LFDDTQLQFKESVSKFAQDNIAPHAERIDKTNSFPKDVNLWKLMGEFNLHGITAPEEYGG 89

Query: 420 SGCNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAG 596
            G  +L   + +EE+SR   +VA     H+ L  +  ++ GT  QK+KYL KL + E+ G
Sbjct: 90  LGLGYLYHCIAMEEISRASGSVALSYGAHSNLCINQLVRNGTAAQKEKYLPKLISGEHVG 149

Query: 597 SFCLTEPSSGSDAFALKTVAKKEGEHYIISGSKMWISNSDVAGVFLVMTNADPSXGYKGI 776
           +  ++EP++GSD   +K  A+K    YI++G+KMW +N   A   +V    D   G KGI
Sbjct: 150 ALAMSEPNAGSDVVGMKCKAEKVDGGYILNGNKMWCTNGPSAETLVVYAKTDTKAGSKGI 209

Query: 777 TCFIVER 797
           T FI+E+
Sbjct: 210 TAFIIEK 216


>At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical to
           Short-chain acyl CoA oxidase [Arabidopsis thaliana]
           GI:5478795; contains InterPro entry IPR006089: Acyl-CoA
           dehydrogenase
          Length = 436

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 1/186 (0%)
 Frame = +3

Query: 246 MLTEXELAMRETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFDNGLMGIETPVEYSGSG 425
           +LT  E A+R+ +R+   ++++P++ +  ++      I   L   G+ G      Y   G
Sbjct: 54  LLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIK-GYGCPG 112

Query: 426 CNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSF 602
            +     +   E++RVD + + ++ +H++L        G+E QK+KYL  L        +
Sbjct: 113 LSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACW 172

Query: 603 CLTEPSSGSDAFALKTVAKKEGEHYIISGSKMWISNSDVAGVFLVMTNADPSXGYKGITC 782
            LTEP +GSDA  L T A K    + I+G K WI NS  A + ++      +    G   
Sbjct: 173 ALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQING--- 229

Query: 783 FIVERE 800
           FIV+++
Sbjct: 230 FIVKKD 235


>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
          Length = 692

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
 Frame = +3

Query: 450 VVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSSG 626
           ++E +  VD ++   + +  +L     + LGT++ + KY   +   +Y G F +TE   G
Sbjct: 132 IMEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYTGCFAMTELHHG 191

Query: 627 SDAFALKTVAKKE--GEHYII-----SGSKMWISNSDVAGVF 731
           S+   L+T A  +   + ++I        K WI N+ V G F
Sbjct: 192 SNVQGLQTTATFDPLKDEFVIDTPNDGAIKWWIGNAAVHGKF 233


>At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low
           similarity to acyl-CoA dehydrogenase [Acinetobacter sp.
           NCIMB9871] GI:14587418; contains Pfam profiles PF01636:
           Phosphotransferase enzyme family, PF00441: Acyl-CoA
           dehydrogenase C-terminal domain, PF02770: Acyl-CoA
           dehydrogenase middle domain
          Length = 824

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +3

Query: 525 LFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPS-SGSDAFALKTVAKKEGEHYIISGSKM 698
           + ++ G +EQ  ++L  L        F +TEP  + SDA  ++   +++G+ Y+I+G+K 
Sbjct: 529 VILRYGNKEQISEWLIPLLEGRIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKW 588

Query: 699 WISNS 713
           W S +
Sbjct: 589 WTSGA 593


>At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044214
          Length = 675

 Score = 34.7 bits (76), Expect = 0.086
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 489 AYVDIHNTLVNSLFMKLGTEEQKKKYLTKL-CTEYAGSFCLTEPSSGSDAFALKTVA 656
           AYVD+H  +        GTEEQ+KK+L+     +  G +  TE   GS+   L+T A
Sbjct: 97  AYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTA 153


>At3g06790.2 68416.m00807 plastid developmental protein DAG,
           putative similar to DAG protein, chloroplast precursor
           [Garden snapdragon] SWISS-PROT:Q38732
          Length = 244

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
 Frame = +3

Query: 423 GCNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCTE-YAGS 599
           GC++   ++V+E     DP      ++ N+ V +L   LG EE+ KK +  +CT  Y G 
Sbjct: 91  GCDYEHWLIVMEF---TDPKPTEE-EMINSYVKTLTSVLGCEEEAKKKIYSVCTSTYTGF 146

Query: 600 FCLTEPSSGSDAFALKTVAKKEGEHYIISGSKMWISNSDVAGVFLVMTNADPSXGYK 770
             L      S+  + K V    G  +++  S + + N D  G   V     P   Y+
Sbjct: 147 GALI-----SEELSCK-VKALPGVLWVLPDSYLDVPNKDYGGDLYVEGKVIPRPQYR 197


>At1g27990.1 68414.m03428 expressed protein
          Length = 271

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 303 VRSLVSVLFPSWRVXLLSAWSKXV 232
           VR+LV +L+  WR+ ++  WSK V
Sbjct: 166 VRALVPLLYTVWRIFVIIGWSKDV 189


>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5)
           identical to HAC5 (GI:21105780) [Arabidopsis thaliana];
           similar to CREB-binding protein GB:S39162 from [Homo
           sapiens]
          Length = 1670

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 470 SRQFLHHQHHCQEIAAGTAVFYRSFDAHQ 384
           +RQ +HH  HC + A    VF ++F   Q
Sbjct: 669 TRQLIHHYKHCGDEACPVCVFVKNFKEKQ 697


>At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong
           similarity to acyl-CoA oxidase [Arabidopsis thaliana]
           GI:3044214
          Length = 664

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 492 YVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT--EYAGSFCLTEPSSGSDAFALKTVA 656
           ++D+H  +        GTE+Q++K+L+ L T  +  G +  TE   GS+   L+T A
Sbjct: 98  FLDLHWGMFVPAIKGQGTEQQQQKWLS-LATKMQIIGCYAQTELGHGSNVQGLETTA 153


>At3g11640.1 68416.m01427 expressed protein
          Length = 186

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 324 KMEDEHRIDDGIRQMLFDNGL-MGIETPVEYSGSGCNFLT 440
           ++ED+   DD +     DNG  + ++ PVEYSG    FLT
Sbjct: 108 ELEDD---DDDVISAEVDNGFEVQVDIPVEYSGDPTPFLT 144


>At4g21370.1 68417.m03088 S-locus protein kinase, putative similar
           to SRKa [Arabidopsis lyrata] gi|13620927|dbj|BAB40986;
           contains Pfam domains PF00954: S-locus glycoprotein
           family, PF00069: Protein kinase domain and PF01453:
           Lectin (probable mannose binding)
          Length = 844

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 531 MKLGTEEQKKKYLTKLCTEYAGSFCLTEPSSGSDAFALKTVAKKE 665
           MKLG +   K+ L +  T +  SF   +PSSGS  F L+T+   E
Sbjct: 168 MKLGRDH--KRGLNRFVTSWKSSF---DPSSGSFMFKLETLGLPE 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,819,061
Number of Sequences: 28952
Number of extensions: 328377
Number of successful extensions: 857
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)