Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D13
         (902 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)             62   6e-10
SB_56373| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  

>SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)
          Length = 101

 Score = 62.1 bits (144), Expect = 6e-10
 Identities = 34/93 (36%), Positives = 52/93 (55%)
 Frame = +2

Query: 476 SAELTSLDEVISNSLKGKELEEFNRIHYGRIDQCALFISSVAAQKAASNGFEIKAYDFPA 655
           +AE  SL++ +  +L  ++L+E  RI YG      L + + A   AA   FE+  Y   A
Sbjct: 2   AAEFESLNKTLEKNLPAEDLKEVKRILYGN-PVSDLSLPAAAVSVAAELDFELAGYKIDA 60

Query: 656 RKEECRKPRIVRLGLIQHSIAISTDNPITQQRL 754
             EE R+PR+VR+G +Q+ I   T+ PI +Q L
Sbjct: 61  AAEELRQPRLVRIGAVQNKIVEPTNMPIAKQVL 93


>SB_56373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 602 AQKAASNGFEIKAYDFPARKEECRKPRIVRLGLIQHSIAISTDNPITQQRLAIFE 766
           A+    N F +  Y   A ++EC K  +  L     SIAI+  N +T + LA  E
Sbjct: 246 AELEKKNSFTLLHYAAQAGQQECLKYLLTALRGANRSIAITDSNGVTPEHLAARE 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,103,694
Number of Sequences: 59808
Number of extensions: 367941
Number of successful extensions: 502
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)