Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D13
         (902 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...   107   1e-23
At1g11660.1 68414.m01339 heat shock protein, putative strong sim...    30   2.4  
At1g48540.2 68414.m05428 leucine-rich repeat family protein            29   5.6  
At1g48540.1 68414.m05427 leucine-rich repeat family protein            29   5.6  
At5g44090.1 68418.m05394 calcium-binding EF hand family protein,...    28   9.7  

>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score =  107 bits (256), Expect = 1e-23
 Identities = 56/128 (43%), Positives = 80/128 (62%), Gaps = 5/128 (3%)
 Frame = +2

Query: 491 SLDEVISNSLKGKELEEFNRIHYGRIDQCALFISSVAAQKAAS-----NGFEIKAYDFPA 655
           SL +++S +LK +  +E NR+  GR   C   +  +   ++A      + F+++A  F A
Sbjct: 22  SLHQLLSANLKPELYQEVNRLLLGR--NCGRSLEQIVLPESAKALSSKHDFDLQAASFSA 79

Query: 656 RKEECRKPRIVRLGLIQHSIAISTDNPITQQRLAIFEKVQKIISAAAAXQVNILCLQXAW 835
            KE+ R PR+VR+GLIQ+SIA+ T  P + Q   IF+K++ II AA    VNILCLQ AW
Sbjct: 80  DKEQMRNPRVVRVGLIQNSIALPTTAPFSDQTRGIFDKLKPIIDAAGVAGVNILCLQEAW 139

Query: 836 NMPFAFCT 859
            MPFAFCT
Sbjct: 140 TMPFAFCT 147


>At1g11660.1 68414.m01339 heat shock protein, putative strong
           similarity to gb|Z70314 heat-shock protein from
           Arabidopsis thaliana and is a member of the PF|00012
           Hsp70 protein family
          Length = 773

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2

Query: 704 QHSIAISTDNPITQQRLAIFEKVQKIISAAAAXQVNILCL 823
           +++I + T+     +  A  EKV+K++SA A  Q+NI CL
Sbjct: 250 KYNIDVYTNTKACVRLRASCEKVKKVLSANAEAQLNIECL 289


>At1g48540.2 68414.m05428 leucine-rich repeat family protein 
          Length = 1051

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 457 NLQRNGFCRTHKFG*SNIKFIKG*RTRRV 543
           NL+ NG C  HK G   +K+++G  T+++
Sbjct: 490 NLECNGSCVDHKAGMDYMKYVEGNETQKI 518


>At1g48540.1 68414.m05427 leucine-rich repeat family protein 
          Length = 1063

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 457 NLQRNGFCRTHKFG*SNIKFIKG*RTRRV 543
           NL+ NG C  HK G   +K+++G  T+++
Sbjct: 490 NLECNGSCVDHKAGMDYMKYVEGNETQKI 518


>At5g44090.1 68418.m05394 calcium-binding EF hand family protein,
           putative / protein phosphatase 2A 62 kDa B'' regulatory
           subunit, putative contains Pfam profile: PF00036 EF
           hand; identical to cDNA protein phosphatase 2A 62 kDa
           B'' regulatory subunit GI:5533378
          Length = 538

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +2

Query: 464 KEMASAELTSLDEVISNSLKGKELEEFNRIHYGRIDQCALFISSVAAQKAASNGFEIKAY 643
           KE+    ++ +D+  SN + G  ++EF  I    + +   F+SSV  +K  ++G  I   
Sbjct: 141 KELREQCISMVDQFFSNYIDGLHMDEFKSI-TKEVCKLPSFLSSVLFRKIDTSGTGIVTR 199

Query: 644 D 646
           D
Sbjct: 200 D 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,803,836
Number of Sequences: 28952
Number of extensions: 265685
Number of successful extensions: 512
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)