Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D12
         (879 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10560.1 68414.m01189 armadillo/beta-catenin repeat family pr...    36   0.047
At3g20830.1 68416.m02634 protein kinase family protein contains ...    29   5.4  

>At1g10560.1 68414.m01189 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 697

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +2

Query: 8   QLRLTIGNSLRFFDSYLESCSLEKYHEDGRQTILYRVPDCRRDGSR 145
           ++R+ I NS R+F     + SL++ H  G Q + + + DC RDG+R
Sbjct: 71  EIRIRIRNSRRYFHDSAAASSLKEIHV-GFQKLKFLLEDCTRDGAR 115


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 719 PIXKPPXPXRWPIH*CRKNLPHL 651
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,120,541
Number of Sequences: 28952
Number of extensions: 204566
Number of successful extensions: 493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)