BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP02_F_D11 (887 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 90 4e-19 SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 46 7e-06 SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 34 0.024 SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 28 1.5 SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 28 2.0 SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 27 2.7 SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 27 2.7 SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 27 4.7 SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 27 4.7 SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 6.2 SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 26 6.2 SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 26 8.2 >SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosaccharomyces pombe|chr 1|||Manual Length = 225 Score = 89.8 bits (213), Expect = 4e-19 Identities = 42/92 (45%), Positives = 59/92 (64%), Gaps = 1/92 (1%) Frame = +1 Query: 388 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 567 +Q R+ +Y H + M+ + A M+ T+LY KRFFPYYV +AG+D +GKG +YS+DP+ Sbjct: 72 IQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPV 131 Query: 568 GHCARHNFRAGGSAAAQLQPLLE-QSNWLKEY 660 G R RAGGSAA + P L+ Q N +Y Sbjct: 132 GSYEREWCRAGGSAANFITPFLDNQVNLHNQY 163 Score = 66.9 bits (156), Expect = 4e-12 Identities = 29/66 (43%), Positives = 44/66 (66%) Frame = +3 Query: 180 QHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCW 359 Q +F+PY NGG+ VAIAGD +A++ DTR G++I TR Q ++ ++ + V+GA+G Sbjct: 3 QSQFDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFE 62 Query: 360 CDTLTL 377 D L L Sbjct: 63 ADALAL 68 Score = 37.9 bits (84), Expect = 0.002 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = +3 Query: 717 DVFISAAERDIYTGDSIYILIITAHGIQEEKFELRKD 827 D F SA ER I GDS+ + IIT G++ L+KD Sbjct: 189 DAFTSAGERHIEVGDSVLVKIITKEGVETRIIPLKKD 225 >SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces pombe|chr 3|||Manual Length = 204 Score = 46.0 bits (104), Expect = 7e-06 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Frame = +1 Query: 385 LLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDP 564 L + ++ +Y+ + + A ++S+ LY KRF PY+ V+AG+ +D + +D Sbjct: 66 LFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDS 125 Query: 565 IGHCA--RHNFRAGGSAAAQLQPLLE 636 IG C +F G+A QL + E Sbjct: 126 IG-CIDFAEDFIVSGTATEQLYGMCE 150 Score = 43.2 bits (97), Expect = 5e-05 Identities = 23/57 (40%), Positives = 30/57 (52%) Frame = +3 Query: 207 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 377 NGGS VA+AG + I +D RL T + K+F + + T LG TG D TL Sbjct: 7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTL 63 >SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosaccharomyces pombe|chr 1|||Manual Length = 267 Score = 34.3 bits (75), Expect = 0.024 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = +3 Query: 210 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDT 368 G +IV + D V+GADTR + G I ++ KKL +S + G DT Sbjct: 35 GTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADT 87 >SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2|||Manual Length = 1217 Score = 28.3 bits (60), Expect = 1.5 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 418 RVRTSASSLVEDAXKVNVSHQQPVAPNTVLSDN 320 R++TSA+ LVE K S+ + + PN S N Sbjct: 588 RIKTSANDLVETLMKCQPSYIRTIKPNQTKSPN 620 >SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 471 Score = 27.9 bits (59), Expect = 2.0 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = +3 Query: 135 SVNENFPEYAVPGAKQHRFEPYADNGGSIVAIAGD-DYAVIGADT 266 S N F P K ++ +GG+ AIA D YA +G+DT Sbjct: 118 SENNLFGRTVNPVVKDSNYDVGGSSGGAAAAIAADICYASVGSDT 162 >SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosaccharomyces pombe|chr 1|||Manual Length = 1033 Score = 27.5 bits (58), Expect = 2.7 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +2 Query: 401 CRCTNTSITNL*PLRQSHRCSQLCCI 478 CRCT T N+ L Q + + +CCI Sbjct: 743 CRCTPTQKANMTRLIQEKKQASVCCI 768 >SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 775 Score = 27.5 bits (58), Expect = 2.7 Identities = 18/90 (20%), Positives = 38/90 (42%) Frame = +3 Query: 69 HSIRSISKRLKLIFP*KSYKMLSVNENFPEYAVPGAKQHRFEPYADNGGSIVAIAGDDYA 248 H +++ K +F K + + + P A+P + D + I GDD Sbjct: 318 HLLKTAEKDNDFVFHDLVVKEVELPKISPLQALPPLPLEKLYGSQDGFETAKKIVGDDLF 377 Query: 249 VIGADTRLSTGFSIYTRDQKKLFKLSESTV 338 + ++T S+Y+ + K+F+ ++ V Sbjct: 378 KAFVPSAVTTASSLYSEETAKVFRAEQAEV 407 >SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 226 Score = 26.6 bits (56), Expect = 4.7 Identities = 20/77 (25%), Positives = 30/77 (38%) Frame = +1 Query: 385 LLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDP 564 LL+ + MY + + A + S M Y + ++AG D G VYS Sbjct: 82 LLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNM-LSAGLIVAGYDEKTGGDVYSIPL 140 Query: 565 IGHCARHNFRAGGSAAA 615 G + GGS +A Sbjct: 141 GGSLHKQPLAIGGSGSA 157 >SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 678 Score = 26.6 bits (56), Expect = 4.7 Identities = 9/24 (37%), Positives = 17/24 (70%) Frame = +1 Query: 610 AAQLQPLLEQSNWLKEYAECNRSS 681 + QL+P+++ NWL+ + E + SS Sbjct: 396 SVQLKPMMQYVNWLEAFYESHESS 419 >SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosaccharomyces pombe|chr 1|||Manual Length = 611 Score = 26.2 bits (55), Expect = 6.2 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -1 Query: 302 VSGIYGKSSAETSVCSDNGIIIAGDGYN 219 V G G ++E VCSD G+ + DG N Sbjct: 77 VRGRRGAVASEVPVCSDIGVSMLADGGN 104 >SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 646 Score = 26.2 bits (55), Expect = 6.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 225 AIAGDDYAVIGADTRLSTGFSI 290 AI GD Y+ IG++ GFSI Sbjct: 321 AIVGDTYSTIGSNVEALPGFSI 342 >SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe|chr 2|||Manual Length = 377 Score = 25.8 bits (54), Expect = 8.2 Identities = 22/77 (28%), Positives = 30/77 (38%) Frame = +1 Query: 406 MYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARH 585 ++ E S TPAV + + P VS VL G+DS + V P+ R Sbjct: 105 LFGREKQNSEATPAVQPPATCPMSNSNQKPAGVSEVLTGVDSKQQSYVPEGCPVATPKRG 164 Query: 586 NFRAGGSAAAQLQPLLE 636 F G+ Q Q E Sbjct: 165 WFNWFGNNDDQKQEAYE 181 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,497,791 Number of Sequences: 5004 Number of extensions: 72878 Number of successful extensions: 236 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 228 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 236 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 446488370 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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