Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_D11
(887 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45) 133 2e-31
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0) 46 5e-05
SB_6455| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.71
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) 32 0.71
SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44) 30 2.9
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8) 29 5.0
SB_37432| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_23884| Best HMM Match : IBN_N (HMM E-Value=0.092) 28 8.8
>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
Length = 291
Score = 133 bits (322), Expect = 2e-31
Identities = 57/86 (66%), Positives = 73/86 (84%)
Frame = +1
Query: 379 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSY 558
T+ + AR+QMYEH+H K+M+ A+AQMLSTMLYY+RFFPYY N+LAGLDS+GKGCV+S+
Sbjct: 143 TKHISARLQMYEHDHGKAMSCTAIAQMLSTMLYYRRFFPYYTYNILAGLDSEGKGCVFSF 202
Query: 559 DPIGHCARHNFRAGGSAAAQLQPLLE 636
DP+G R +RAGGSA+A LQPLL+
Sbjct: 203 DPVGSYEREVYRAGGSASALLQPLLD 228
Score = 87.0 bits (206), Expect = 2e-17
Identities = 42/85 (49%), Positives = 56/85 (65%)
Frame = +3
Query: 123 YKMLSVNENFPEYAVPGAKQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRD 302
Y + + Y KQ F PYA NGG+++AI+G+D+AVI +DTRLS GF I+TRD
Sbjct: 58 YSLTKMQVGSESYYGGNPKQTYFSPYAFNGGTVLAISGEDFAVIASDTRLSQGFQIHTRD 117
Query: 303 QKKLFKLSESTVLGATGCWCDTLTL 377
K++KL+ STVLG +G D LTL
Sbjct: 118 SPKVYKLTGSTVLGCSGFHGDCLTL 142
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +3
Query: 717 DVFISAAERDIYTGDSIYILIITAHGIQEEKFELRKD 827
DVF SAAERDIYTGD++ I ++++ G+ EE F LR+D
Sbjct: 255 DVFTSAAERDIYTGDAVIINVVSSEGVSEEAFPLRRD 291
Score = 33.9 bits (74), Expect = 0.18
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2
Query: 590 SALVVPLLHSCNRSSNNQIGLKNMQNVTEAPLTREKAL 703
SAL+ PLL +NQIG KN + V PLTR+KA+
Sbjct: 220 SALLQPLL-------DNQIGFKNQEGVPHTPLTRDKAV 250
>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 909
Score = 45.6 bits (103), Expect = 5e-05
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +1
Query: 388 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLD-SDGKGCVYSYDP 564
L+ R+ +YE + + M+S +LY +RF PY+V V+AGLD + + S D
Sbjct: 137 LKFRLNLYELREGRPIKPKTFLSMVSNLLYERRFGPYFVEPVIAGLDPKTNEPFISSMDL 196
Query: 565 IG-HCARHNFRAGGSAAAQLQPLLEQSNWLKE 657
IG +F G+ + Q+ + E S W+ +
Sbjct: 197 IGCPMETKDFVVSGTCSEQMYGMCE-SLWVPD 227
Score = 37.1 bits (82), Expect = 0.019
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 207 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 377
NG +I+A+ G + I AD RL + D +K+F++ E +G G D T+
Sbjct: 77 NGAAIIAMVGKNCVAIAADRRLGIQAQTVSCDFQKIFQMGEKLFVGLPGLATDVQTI 133
>SB_6455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 32.3 bits (70), Expect = 0.54
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 291 YTRDQKKLFKLSESTVLGATGCWCDTLTLXASSTSEDA---DVRTRA*QIYDHSGSRTDA 461
+ + Q K+F S V TG WCD L + +++ DA +R + ++
Sbjct: 25 WAKMQNKVFGPENSRVFRETGAWCDLLGMSSTTPLYDAHFPGLRAELSFAVQPNTNKRSP 84
Query: 462 LNYVVLQTI 488
+N+V+LQ+I
Sbjct: 85 VNHVLLQSI 93
>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 31.9 bits (69), Expect = 0.71
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
Frame = -1
Query: 758 SGINVTFCSTDEHILQKSQGPFP*SKELLLHSAYSLSQFDCSRSGCSCAAAEPPARKLWR 579
S ++VT ++ I KS P HS + S D + C+A PA K +R
Sbjct: 210 SHVSVTKPASTGRIPNKSHQAIPKGFCYRFHSGKACSGCDFKHACYLCSAGSHPATKCFR 269
Query: 578 AQCPIGS*LYTHPLPSLSKPANTLDT*YGKNRL*Y---NIVESICATAGVVIDLLCSCS 411
Q H P S PA+ N N V S+ T G +++ L + S
Sbjct: 270 PQRQQPGGQSEHARPQSSNPASGFQRKSPSNNAFQPDGNSVVSVATTLGPIVETLMASS 328
>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
Length = 938
Score = 31.9 bits (69), Expect = 0.71
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +3
Query: 210 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCD 365
G S++ I + ++ ADT S G R+ +L +++E+T++GA G + D
Sbjct: 875 GTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGDYAD 926
>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
Length = 246
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 736 QNVTFIPETPSTFSSSLHMVFKKRNLNFAK 825
+N+TFIP+ FS + M+ K +L F K
Sbjct: 94 ENITFIPDGNGEFSEGMGMLVDKSDLGFGK 123
>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2937
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 527 TATVRDVYIVTTLSDTVRAITSALVVPLLHSCNRSSNNQ 643
TAT +YI+ +LS + +T L SCN++S NQ
Sbjct: 2048 TATANAIYILQSLSPYITGVTDTNTF-LFDSCNQTSCNQ 2085
>SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)
Length = 845
Score = 29.1 bits (62), Expect = 5.0
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 222 VAIAGD--DYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 377
VA+ D D +GAD R G +IY RD + ++ S A C C TL L
Sbjct: 249 VALEADLRDRGWLGADLRSKGGVAIYVRDTISVIEIKRSE---AYECLCVTLDL 299
>SB_37432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1006
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -3
Query: 213 LRCPRRARNDAVSHQAQ--HIQESSR*RSTFCMIFMEKLVLIASKYFESSDMQQIVCKSL 40
L C + NDA ++ +I S + FC K V +AS SSD ++V KS
Sbjct: 933 LHCTNHSENDAQDKPSKDKYIPPYSISNNEFCACGQPKSVPVASCSICSSDEFKLVVKSC 992
Query: 39 KE 34
KE
Sbjct: 993 KE 994
>SB_23884| Best HMM Match : IBN_N (HMM E-Value=0.092)
Length = 230
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -2
Query: 361 HQQPVAPNTVLSDNLNSFFWSLVYMENPVLRRVSAP 254
+Q+ P+ VLS N + LV ++ PVL++V+AP
Sbjct: 28 YQKLKTPHVVLSVNRFFYLRDLVMIQIPVLQKVAAP 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,373,032
Number of Sequences: 59808
Number of extensions: 555996
Number of successful extensions: 1397
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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