Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_D11
(887 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 87 1e-17
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 87 1e-17
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 44 2e-04
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 32 0.63
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 31 1.1
Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical pr... 30 1.9
U50313-5|AAA92329.1| 270|Caenorhabditis elegans Palmitoyl prote... 29 5.9
AY691522-1|AAU01161.1| 254|Caenorhabditis elegans palmitoyl pro... 29 5.9
Z81502-4|CAB04107.2| 357|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z70212-5|CAA94165.3| 320|Caenorhabditis elegans Hypothetical pr... 28 7.8
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 87.4 bits (207), Expect = 1e-17
Identities = 37/85 (43%), Positives = 54/85 (63%)
Frame = +1
Query: 382 RLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYD 561
++LQ+R+ Y ++ M+ A++LS LYY+RFFPYY +LAG+D GKG V+SYD
Sbjct: 109 KVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGAVFSYD 168
Query: 562 PIGHCARHNFRAGGSAAAQLQPLLE 636
PIG R + A G+A + P L+
Sbjct: 169 PIGCIERLGYSASGAAEPMIIPFLD 193
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/68 (35%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = +3
Query: 177 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLS-TGFSIYTRDQKKLFKLSESTVLGATG 353
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L +G
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 354 CWCDTLTL 377
+ D L L
Sbjct: 100 FYGDVLQL 107
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 717 DVFISAAERDIYTGDSIYILIITAHGIQEEKF-ELRKD 827
D F AAER+I TGD I+++I A KF LR+D
Sbjct: 221 DSFRGAAEREISTGDKIHLVIAEAGKPVVVKFLPLRED 258
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 87.4 bits (207), Expect = 1e-17
Identities = 37/85 (43%), Positives = 54/85 (63%)
Frame = +1
Query: 382 RLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYD 561
++LQ+R+ Y ++ M+ A++LS LYY+RFFPYY +LAG+D GKG V+SYD
Sbjct: 109 KVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGAVFSYD 168
Query: 562 PIGHCARHNFRAGGSAAAQLQPLLE 636
PIG R + A G+A + P L+
Sbjct: 169 PIGCIERLGYSASGAAEPMIIPFLD 193
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/68 (35%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = +3
Query: 177 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLS-TGFSIYTRDQKKLFKLSESTVLGATG 353
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L +G
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 354 CWCDTLTL 377
+ D L L
Sbjct: 100 FYGDVLQL 107
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 717 DVFISAAERDIYTGDSIYILIITAHGIQEEKF-ELRKD 827
D F AAER+I TGD I+++I A KF LR+D
Sbjct: 221 DSFRGAAEREISTGDKIHLVIAEAGKPVVVKFLPLRED 258
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +3
Query: 210 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 377
GG++VA+AGD+ I +D R+ + DQKK+ K+++ +G G D T+
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTV 63
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +1
Query: 397 RMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG-H 573
R +YE N+++ +++M+S + Y RF Y+ ++AGLD K + D IG
Sbjct: 70 RKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCV 129
Query: 574 CARHNFRAGGSAAAQLQPLLE 636
A +F A G+ L + E
Sbjct: 130 SAPRDFVAVGTGQEYLLGVCE 150
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 210 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCD 365
G +IVA+A V+GAD+R + G I + +K+ KL+ES G D
Sbjct: 46 GTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAAD 97
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +3
Query: 210 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDT 368
G +++A+ + V+G D+R S G I +R K+ ++++ V+ +G DT
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADT 75
>Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical
protein C03A3.2 protein.
Length = 492
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = -1
Query: 656 SLSQFDCSRSGCSCAAAEPPARKLWRAQCPIGS*LYT----HPLPSLSKPANTLDT*YGK 489
SL+ S G AAA PPA G +Y H +PSL P T D +GK
Sbjct: 218 SLATMQLSSDG---AAAHPPAYNFHGFGSLFGCAVYAFMCHHSIPSLITPMRTKDNVFGK 274
Query: 488 NRL*YNIV 465
L Y +V
Sbjct: 275 IALVYGVV 282
>U50313-5|AAA92329.1| 270|Caenorhabditis elegans Palmitoyl protein
thioesteraseprotein 1 protein.
Length = 270
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -2
Query: 646 NLIVRGAVAAVQQRNHQRGSYGAHSVR*GRNYIHIPYRRCPNPPTRWIRSMG 491
N +V A ++ + Y A G ++ +RCPNPP + + S+G
Sbjct: 53 NELVYMACIKIKNDPELKNGYNAIGFSQGAQFLRAVAQRCPNPPMKNLVSVG 104
>AY691522-1|AAU01161.1| 254|Caenorhabditis elegans palmitoyl
protein thioesterase protein.
Length = 254
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -2
Query: 646 NLIVRGAVAAVQQRNHQRGSYGAHSVR*GRNYIHIPYRRCPNPPTRWIRSMG 491
N +V A ++ + Y A G ++ +RCPNPP + + S+G
Sbjct: 53 NELVYMACIKIKNDPELKNGYNAIGFSQGAQFLRAVAQRCPNPPMKNLVSVG 104
>Z81502-4|CAB04107.2| 357|Caenorhabditis elegans Hypothetical
protein F14B6.4 protein.
Length = 357
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +1
Query: 748 FIPETPSTFSSSLHMVFKKRNLNFAKINLLQKSXXYFTXENNXVI 882
++P+ ++ SS + M+ R +FA+ N+L+K+ + EN+ +I
Sbjct: 78 YLPKFQNSMSSEILMIVASRTDSFARRNVLRKT--WMNPENSEII 120
>Z70212-5|CAA94165.3| 320|Caenorhabditis elegans Hypothetical
protein R04D3.7 protein.
Length = 320
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 117 KSYKMLSVNENFPEYAVPGAKQHRFEPYADNG 212
KSY+ S+N+N EY+V G + F P + NG
Sbjct: 159 KSYE--SINKNLEEYSVIGIMNYSFLPSSING 188
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,559,065
Number of Sequences: 27780
Number of extensions: 418943
Number of successful extensions: 1306
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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