Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D11
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.9  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   6.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 144 ENFPEYAVPGAKQHR 188
           EN+P Y + GAKQ +
Sbjct: 80  ENYPHYQMSGAKQKK 94


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 163 LCLVRNSIVSSPTRTTEVVL*PSPAMIMPLSEQTL 267
           LC+V NS+      T   V  P  A I P S QT+
Sbjct: 286 LCIVNNSVGGESVETVLTVTAPLGAEIEP-STQTI 319


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 651 KPI*LFEERLQLCSSGTTSAEVMARTVSDRVV 556
           +PI LFE+   +  SGTT+ +       D +V
Sbjct: 441 QPIKLFEQWKSILESGTTTLQTRTMHPYDHLV 472


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 578 RAITSALVVPLLHSCNRSSNNQIGLKN 658
           + I   L   L + CNR ++ QIG+ N
Sbjct: 51  KKIKELLPEVLNNHCNRCTSRQIGIAN 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,617
Number of Sequences: 438
Number of extensions: 5173
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)