Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_D09
(1109 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.023
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.031
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.50
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 0.88
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.0
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 2.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.7 bits (76), Expect = 0.023
Identities = 32/111 (28%), Positives = 35/111 (31%), Gaps = 1/111 (0%)
Frame = +3
Query: 504 PXSPXPXPRXPS-PXCPXPXXXPSXXXLXXXPIYPPXPPPXXXXXPPXPPNSLXXXXXXX 680
P S P PS P P PS P PP PPP PPNS
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSA----PAPPPIPPPSNGTVSS-PPNS--PPRPIA 276
Query: 681 XLASQPSXXQTSLSXXRKPPSXVPTTXXLXXPXXPPXPPPRPNPXXXXXPI 833
++ P+ TS P S V PP PPP PI
Sbjct: 277 PVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPI 327
Score = 33.5 bits (73), Expect = 0.054
Identities = 29/106 (27%), Positives = 35/106 (33%)
Frame = +3
Query: 495 SXQPXSPXPXPRXPSPXCPXPXXXPSXXXLXXXPIYPPXPPPXXXXXPPXPPNSLXXXXX 674
S P P P +P P P S P P PP PP P SL
Sbjct: 386 SNPPAPPPAIPGRSAPALP-PLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444
Query: 675 XXXLASQPSXXQTSLSXXRKPPSXVPTTXXLXXPXXPPXPPPRPNP 812
A+ P ++ P+ +P L P P PPP P P
Sbjct: 445 ----AAPPLPPSAPIAPPL--PAGMPAAPPL--PPAAPAPPPAPAP 482
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +3
Query: 687 ASQPSXXQTSLSXXRKPPSXVPTTXXLXXPXXPPXPPPRPNPXXXXXPIIRST 845
+S+P SLS PP P+ + P P PPRP P I ST
Sbjct: 238 SSRPPERVPSLSAPAPPPIPPPSNGTVSSP---PNSPPRPIAPVSMNPAINST 287
Score = 29.1 bits (62), Expect = 1.2
Identities = 27/107 (25%), Positives = 27/107 (25%), Gaps = 3/107 (2%)
Frame = +3
Query: 519 PXPRXPSPXCPXPXXXPSXXXLXXXPIYPPXPPPXXXXXPPXP-PNSLXXXXXXXXLASQ 695
P P S P P P PP PP P P SL S
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA 435
Query: 696 PSXXQTSLSXXRKPPSXVPTTXXLXX--PXXPPXPPPRPNPXXXXXP 830
P P P L P PP PP P P P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/62 (27%), Positives = 18/62 (29%)
Frame = +3
Query: 462 TVPXXGPG*XXSXQPXSPXPXPRXPSPXCPXPXXXPSXXXLXXXPIYPPXPPPXXXXXPP 641
T P P S P +P P P P P L P PP PP
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Query: 642 XP 647
P
Sbjct: 479 AP 480
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.031
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +3
Query: 504 PXSPXPXPRXPSPXCPXPXXXPSXXXLXXXPIYPPXPPPXXXXXPPXPP 650
P P P P+P P P P + P PP PP PP PP
Sbjct: 732 PPPPPPAVIVPTP-APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.50
Identities = 25/111 (22%), Positives = 30/111 (27%), Gaps = 4/111 (3%)
Frame = +3
Query: 513 PXPXPRXPSPXCPXPXXXPSXXXLXXXPIYPPXPPPXXXXXPPXPPNSLXXXXXXXXLAS 692
P P P +P P P P P P PP P S +
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGA 1082
Query: 693 QPSXXQTSLSXXRKPPSXVPTTXXLXXPXXP-PXP---PPRPNPXXXXXPI 833
P + + KP P P P P PP P P P+
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.5 bits (63), Expect = 0.88
Identities = 19/46 (41%), Positives = 19/46 (41%)
Frame = -2
Query: 649 GGXGGFXXXXGGGXGG*IGXXXRXXXEGXXXGXGQXGEGSRGXGXG 512
GG GGF GG GG G R G G G GSRG G
Sbjct: 138 GGRGGFRGGRGGSRGG-FGGNSRGGFGG--GSRGGFGGGSRGGSRG 180
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 1.2
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = -2
Query: 649 GGXGGFXXXXGGGXGG*IGXXXRXXXEGXXXGXGQXGEGSRGXGXGEXGXXEXXHP 482
GG GGF GG GG G R G G G S G G + G P
Sbjct: 23 GGRGGFGGGRGGARGGGRG-GARGGRGGRGGARGGRGGSSGGRGGAKGGAKVIIEP 77
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 2.0
Identities = 20/79 (25%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Frame = +3
Query: 525 PRXPSPXCPXPXXXPSXXXLXXXPIYPPXP---PPXXXXXPPXPPNSLXXXXXXXXLASQ 695
P P+P P P I PP P PP PP P + + S
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 696 PSXXQTSLSXXRKPPSXVP 752
PS + PP P
Sbjct: 185 PSAPSLPSAVPPMPPKVPP 203
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/50 (28%), Positives = 16/50 (32%)
Frame = +3
Query: 504 PXSPXPXPRXPSPXCPXPXXXPSXXXLXXXPIYPPXPPPXXXXXPPXPPN 653
P S P P P P PS + PP P PP P+
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.9 bits (59), Expect = 2.7
Identities = 24/103 (23%), Positives = 30/103 (29%), Gaps = 5/103 (4%)
Frame = +3
Query: 504 PXSPXPXPRXPSPXCPXPXXXPSXXXLXXXPIYPPXPP-PXXXXXPPXPPNSLXXXXXXX 680
P P P +P P P+ + P P P P P P
Sbjct: 602 PSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEA 661
Query: 681 XLASQPSXXQT--SLSXXRKPPSX--VPTTXXLXXPXXPPXPP 797
QP + +PP+ VP L P PP PP
Sbjct: 662 PSVPQPPAAPVVPEVPSVPQPPAVPVVPEAGQLNEPVVPPLPP 704
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,799
Number of Sequences: 5004
Number of extensions: 21431
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 587693690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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