Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_D08
(911 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 147 2e-36
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 147 2e-36
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 38 0.003
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.92
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 29 1.2
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 4.9
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 8.5
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 8.5
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 147 bits (356), Expect = 2e-36
Identities = 71/84 (84%), Positives = 79/84 (94%)
Frame = +2
Query: 524 PXEDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINA 703
P EDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INA
Sbjct: 120 PREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINA 179
Query: 704 AKGSSNSYAIKKKDELERVAKSNR 775
AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 180 AKGSSNSYAIKKKDELERVAKSNR 203
Score = 119 bits (287), Expect = 5e-28
Identities = 57/74 (77%), Positives = 64/74 (86%)
Frame = +1
Query: 307 LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 486
LPH+AGR+ KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NP
Sbjct: 48 LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNP 107
Query: 487 LQVLVTAIINSGPR 528
LQVLV A+ GPR
Sbjct: 108 LQVLVDAVAACGPR 121
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 147 bits (356), Expect = 2e-36
Identities = 71/84 (84%), Positives = 79/84 (94%)
Frame = +2
Query: 524 PXEDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINA 703
P EDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INA
Sbjct: 120 PREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINA 179
Query: 704 AKGSSNSYAIKKKDELERVAKSNR 775
AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 180 AKGSSNSYAIKKKDELERVAKSNR 203
Score = 119 bits (287), Expect = 5e-28
Identities = 57/74 (77%), Positives = 64/74 (86%)
Frame = +1
Query: 307 LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 486
LPH+AGR+ KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NP
Sbjct: 48 LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNP 107
Query: 487 LQVLVTAIINSGPR 528
LQVLV A+ GPR
Sbjct: 108 LQVLVDAVAACGPR 121
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 37.5 bits (83), Expect = 0.003
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = +1
Query: 367 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 525
V+ L N +M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.92
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 426 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 524
G TYC C L+NW K S S C +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 444 TCV*NYSLVNWRKPSASTRDCHYQLWTPXKIRLGSVVRVQFVVKPLMFHPCAES 605
TCV + ++ R + + DC QLW+ + ++ +++VV + F+P ES
Sbjct: 299 TCV-AFHPIDDRYFVSGSLDCKIQLWSILRHKILHWTELEYVVSTICFYPDGES 351
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 702 QLRVHLTPTPSKRRTSWSVLLNPTV 776
Q ++H P P +RR S + L NP++
Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 375 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 497
PYK+ + + W + G+TY + + + L R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 8.5
Identities = 27/84 (32%), Positives = 42/84 (50%)
Frame = +2
Query: 506 PLSTLDPXEDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVA 685
PLS++ E R R + VS +RR++ + L T RE N+K E
Sbjct: 79 PLSSIQDLE-GFREFMENLEHRYEMTVSEVRRLSHEVNDLQTD-RE----NLKHQFEDQI 132
Query: 686 DELINAAKGSSNSYAIKKKDELER 757
++L N+ + NS ++KKDELE+
Sbjct: 133 EKL-NSEISNQNSLILQKKDELEK 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,441
Number of Sequences: 5004
Number of extensions: 49122
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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