Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D08
         (911 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               166   3e-41
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               31   1.3  
SB_51324| Best HMM Match : Fukutin-related (HMM E-Value=7.1)           29   3.9  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   5.2  
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   28   9.1  
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           28   9.1  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  166 bits (403), Expect = 3e-41
 Identities = 80/84 (95%), Positives = 83/84 (98%)
 Frame = +2

Query: 524 PXEDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINA 703
           P EDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARE+AFRNIK+IAEC+ADELINA
Sbjct: 189 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARESAFRNIKSIAECLADELINA 248

Query: 704 AKGSSNSYAIKKKDELERVAKSNR 775
           AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 249 AKGSSNSYAIKKKDELERVAKSNR 272



 Score =  156 bits (378), Expect = 3e-38
 Identities = 72/90 (80%), Positives = 81/90 (90%)
 Frame = +1

Query: 259 LSLQASISVKAQYAKXLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 438
           +SL   I+VK +Y+  LPH+AGRYA KRFRKAQCPIVER+TNS+MMHGRNNGKKLM VRI
Sbjct: 101 ISLTDYIAVKEKYSTYLPHTAGRYAAKRFRKAQCPIVERITNSMMMHGRNNGKKLMTVRI 160

Query: 439 VKHAFEIIHLLTGENPLQVLVTAIINSGPR 528
           +KH+FEIIHLLTGENPLQVLV AIINSGPR
Sbjct: 161 IKHSFEIIHLLTGENPLQVLVNAIINSGPR 190



 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 192 AAAIPAIKLFGSWXCSAVQVSD 257
           A  +P IKLFG W    VQVSD
Sbjct: 16  APEVPDIKLFGKWSTEDVQVSD 37



 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 192 AAAIPAIKLFGSWXCSAVQVSD 257
           A  +P IKLFG W    VQVSD
Sbjct: 79  APEVPDIKLFGKWSTEDVQVSD 100


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 665 TIAECVADELINAAKGSSNSY--AIKKKDELERVAK 766
           T  +C+ DEL +  +G  NSY   +K+K+ELER  K
Sbjct: 422 TEVQCLRDELKDNEQGMDNSYQAILKEKEELERSHK 457


>SB_51324| Best HMM Match : Fukutin-related (HMM E-Value=7.1)
          Length = 248

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 271 PAETESETCTAEQXQLPKSLIAGMAAAWGKD 179
           P+ T  ET TA    +PK     M A WGKD
Sbjct: 99  PSSTTEETKTATTTPVPKYFEYKMPAKWGKD 129


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 703  CIN*FICNTLCDCFNISECSLTCTC 629
            C+N  +C+    C  +   SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188


>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1338

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 639 RAPVHKSQIAWLTRRKGETSTA*RRTVPARPILVESSXGSRVDNGSHEYL 490
           R P    +IA   R+   T  A ++T P+RP   ++  G+R+ + + E L
Sbjct: 461 RRPTSSGKIAPPPRQTSPTKQATKKTTPSRPPPTQTKKGNRLMSPTKELL 510


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 211 SSFSAAGVAPLCKSLTLSLQASISVKAQY--AKXLPHSAGRY 330
           SSF+++ VA LC + TL  +   +V A +  A  LPH    Y
Sbjct: 33  SSFTSSIVAKLCPNKTLEKEERFAVGADFFTAAQLPHVTATY 74


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 685 CNTLCDCFNISECSLTCTCAQKPDCLVDSA 596
           C   C C   + C   CTC Q   C+V SA
Sbjct: 226 CCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,479,967
Number of Sequences: 59808
Number of extensions: 397091
Number of successful extensions: 1001
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)