Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D08
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   167   1e-41
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    29   3.5  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    29   3.5  
Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    29   6.1  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  167 bits (406), Expect = 1e-41
 Identities = 80/84 (95%), Positives = 83/84 (98%)
 Frame = +2

Query: 524 PXEDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINA 703
           P EDSTRIGRAGTVRRQAVDV+PLRRVNQAIWLLCTGAREAAFRN+KTIAEC+ADELINA
Sbjct: 127 PREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINA 186

Query: 704 AKGSSNSYAIKKKDELERVAKSNR 775
           AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 187 AKGSSNSYAIKKKDELERVAKSNR 210



 Score =  145 bits (352), Expect = 3e-35
 Identities = 70/90 (77%), Positives = 77/90 (85%)
 Frame = +1

Query: 259 LSLQASISVKAQYAKXLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 438
           +SL   I VK + AK LPHSAGR+  +RFRKA CPIVERL NSLMMHGRNNGKKLM VRI
Sbjct: 39  ISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRI 98

Query: 439 VKHAFEIIHLLTGENPLQVLVTAIINSGPR 528
           VKHAFEII+LLTGENP+QVLV A+INSGPR
Sbjct: 99  VKHAFEIIYLLTGENPVQVLVNAVINSGPR 128


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 655 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 545
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 655 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 545
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 456 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 494


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 655 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 545
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 655 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 545
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 195 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 233


>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +2

Query: 596 RRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 775
           +RV   +    T    A  RN   + E  A+E I A +   N +A+K +   +  A SNR
Sbjct: 474 QRVQDTVQKARTAVGYAGTRNRSPLREADAEE-IAATEALKNRFAVKSRGTAKAKANSNR 532

Query: 776 *NILLSHL 799
              LL  +
Sbjct: 533 GAALLESI 540


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,117
Number of Sequences: 27780
Number of extensions: 291530
Number of successful extensions: 772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)