Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D08
         (911 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   153   2e-37
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   152   4e-37
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   152   4e-37
At3g30560.1 68416.m03867 hypothetical protein                          30   2.4  
At4g03690.1 68417.m00504 hypothetical protein very low similarit...    29   4.3  
At4g39450.1 68417.m05582 expressed protein                             29   5.7  
At3g45290.1 68416.m04890 seven transmembrane MLO family protein ...    28   9.9  
At1g59590.1 68414.m06702 expressed protein                             28   9.9  

>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  153 bits (370), Expect = 2e-37
 Identities = 74/84 (88%), Positives = 80/84 (95%)
 Frame = +2

Query: 524 PXEDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINA 703
           P ED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAEC+ADELINA
Sbjct: 124 PREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINA 183

Query: 704 AKGSSNSYAIKKKDELERVAKSNR 775
           AKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 184 AKGSSNSYAIKKKDEIERVAKANR 207



 Score =  138 bits (334), Expect = 5e-33
 Identities = 66/91 (72%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
 Frame = +1

Query: 259 LSLQASISVK-AQYAKXLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 435
           +SL   I V+ +++A  +PH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR
Sbjct: 35  ISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 94

Query: 436 IVKHAFEIIHLLTGENPLQVLVTAIINSGPR 528
           IVKHA EIIHLL+  NP+QV++ AI+NSGPR
Sbjct: 95  IVKHAMEIIHLLSDLNPIQVIIDAIVNSGPR 125


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  152 bits (368), Expect = 4e-37
 Identities = 73/84 (86%), Positives = 80/84 (95%)
 Frame = +2

Query: 524 PXEDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINA 703
           P ED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFRNIKTIAEC+ADELINA
Sbjct: 124 PREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINA 183

Query: 704 AKGSSNSYAIKKKDELERVAKSNR 775
           AKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 184 AKGSSNSYAIKKKDEIERVAKANR 207



 Score =  139 bits (337), Expect = 2e-33
 Identities = 67/91 (73%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
 Frame = +1

Query: 259 LSLQASISVKA-QYAKXLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 435
           +SL   I V+A ++A  +PH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR
Sbjct: 35  ISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 94

Query: 436 IVKHAFEIIHLLTGENPLQVLVTAIINSGPR 528
           IVKHA EIIHLL+  NP+QV++ AI+NSGPR
Sbjct: 95  IVKHAMEIIHLLSDLNPIQVIIDAIVNSGPR 125


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  152 bits (368), Expect = 4e-37
 Identities = 73/84 (86%), Positives = 80/84 (95%)
 Frame = +2

Query: 524 PXEDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINA 703
           P ED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFRNIKTIAEC+ADELINA
Sbjct: 124 PREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINA 183

Query: 704 AKGSSNSYAIKKKDELERVAKSNR 775
           AKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 184 AKGSSNSYAIKKKDEIERVAKANR 207



 Score =  139 bits (337), Expect = 2e-33
 Identities = 67/91 (73%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
 Frame = +1

Query: 259 LSLQASISVKA-QYAKXLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 435
           +SL   I V+A ++A  +PH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR
Sbjct: 35  ISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 94

Query: 436 IVKHAFEIIHLLTGENPLQVLVTAIINSGPR 528
           IVKHA EIIHLL+  NP+QV++ AI+NSGPR
Sbjct: 95  IVKHAMEIIHLLSDLNPIQVIIDAIVNSGPR 125


>At3g30560.1 68416.m03867 hypothetical protein
          Length = 1473

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 599  GARVKHQRLDDELYPHDRS*SNLXRGPELIMAVTS 495
            G R  H R    L PH+ S  N+ RG +L   VT+
Sbjct: 1063 GGRTAHSRFGIPLTPHETSTCNMERGSDLAELVTA 1097


>At4g03690.1 68417.m00504 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 570

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 599 GARVKHQRLDDELYPHDRS*SNLXRGPELIMAVTS 495
           G R  H R    L PH+ S  N+ RG +L   VT+
Sbjct: 258 GGRTAHSRFGIPLTPHETSTCNIERGIDLAELVTA 292


>At4g39450.1 68417.m05582 expressed protein
          Length = 1553

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = +2

Query: 581 DVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 724
           DVSPL  +   IWL  T ARE +   +  I   +A E I AA  S+NS
Sbjct: 411 DVSPLSCLT--IWLEITAARETSSIKVNDITTKIA-ENIGAAVVSTNS 455


>At3g45290.1 68416.m04890 seven transmembrane MLO family protein /
           MLO-like protein 3 (MLO3) membrane protein Mlo3
           [Arabidopsis thaliana] gi|14091576|gb|AAK53796; similar
           to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221
           [Hordeum vulgare][Barley]
          Length = 508

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 415 CHCSDRASLESL*GAPRLGTGLYGNACVHT-CQLNEVXILRTAL*RKWRPAETESET 248
           C    + SL S  G  +L    +  AC+H  C L  + +L  A  RKW   E E++T
Sbjct: 134 CSSKGKTSLISEEGLTQLSYFFFVLACMHILCNL-AILLLGMAKMRKWNSWEKETQT 189


>At1g59590.1 68414.m06702 expressed protein
          Length = 211

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 707 KGSSNSYAIKKKDELERVAKSNR 775
           +GSS SYA+KKKD   +++  NR
Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,675,689
Number of Sequences: 28952
Number of extensions: 264659
Number of successful extensions: 617
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)