Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D06
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    40   4e-04
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    39   0.001
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   6.2  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 21/41 (51%), Positives = 23/41 (56%)
 Frame = +3

Query: 702 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKXFEPPXHP 824
           V KA  AQ+ V KG H K  RK+R S  FRRPK  E    P
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKP 43



 Score = 30.3 bits (65), Expect = 0.38
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 796 PRXLNLLXTXKYPXKSLPXRNRMDAYNII 882
           P+ L L    KY  KS+P  +R+D Y II
Sbjct: 34  PKTLELARKPKYARKSVPHASRLDEYKII 62


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 19/41 (46%), Positives = 23/41 (56%)
 Frame = +3

Query: 702 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKXFEPPXHP 824
           V KA  AQ+ V KG H K  +K+R S  FRRPK  +    P
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKP 43


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 602 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 691
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,035
Number of Sequences: 5004
Number of extensions: 24398
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)