Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D06
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    35   0.075
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     33   0.30 

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 35.1 bits (77), Expect = 0.075
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 708 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKXFEPPXHP*IPK 836
           +ALKA + V  G   K  +KIR SV F RPK  +    P  P+
Sbjct: 26  QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPR 68



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 796 PRXLNLLXTXKYPXKSLPXRNRMDAYNII 882
           P+ L      KYP  S P RN++D Y I+
Sbjct: 55  PKTLKKSRDPKYPRVSTPGRNKLDQYQIL 83


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 708 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKXFEPPXHP*IPKXVSA 848
           +ALK  + V  G   ++ +KIR SV F RPK  +    P  P+ VSA
Sbjct: 16  QALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPR-VSA 61



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 754 REYGKFATLCISADPRXLNLLXTXKYPXKSLPXRNRMDAYNII 882
           R+  K  T      P+ L      KYP  S P RN++D Y I+
Sbjct: 31  RKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQIL 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,092,403
Number of Sequences: 37544
Number of extensions: 161637
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)