Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D06
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    41   0.001
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    38   0.010
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 708 KALKAQRKVVKGEHGKRVRKIRNSVHFRRP 797
           KAL A++KVVKG+     R++R SVHFRRP
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRRP 40


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +3

Query: 702 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPK 800
           V KA++A++ VVKG      + +R SVHFRRPK
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPK 40


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 761  YSLPMFTFYNLPLSLKCFSNRFHYFF 684
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,116,392
Number of Sequences: 27780
Number of extensions: 143133
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)