Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D06
         (885 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va...    38   0.012
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id...    34   0.14 

>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
           various ribosomal L23a proteins
          Length = 154

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 699 PVTKALKAQRKVVKGEHGKR-VRKIRNSVHFRRPKXFEPPXHP*IPK 836
           P  KALKA + V  G+  K+  +KIR  V F RPK    P  P  PK
Sbjct: 14  PKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60


>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
           identical to GB:AF034694
          Length = 154

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 699 PVTKALKAQRKVVKGE-HGKRVRKIRNSVHFRRPKXFEPPXHP*IPK 836
           P  KALKA + V  G+   K+ +KIR  V F RPK    P     PK
Sbjct: 14  PKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,725,493
Number of Sequences: 28952
Number of extensions: 135362
Number of successful extensions: 366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)