Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_D05
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 264 1e-71
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 36 0.010
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 32 0.094
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 31 0.16
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 31 0.22
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 1.2
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 1.2
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 2.0
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 27 2.7
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 27 2.7
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 3.5
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 4.7
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 26 6.1
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 26 6.1
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 8.1
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 264 bits (647), Expect = 1e-71
Identities = 120/205 (58%), Positives = 156/205 (76%)
Frame = +3
Query: 225 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 404
+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++KGKRRK+TV IVL+D+
Sbjct: 39 KKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVKGKRRKDTVLIVLTDEEME 98
Query: 405 DEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 584
D R+ D+V+I PCP +KY +R+ +LP+ D+VEGLTG+LF+VYLKPY
Sbjct: 99 DGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTVEGLTGSLFDVYLKPY 158
Query: 585 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEAL 764
F+EAYRPI + D F+VRG MR VEFKVV+ P F IV+ DT+IH +GEPI RE+EE +L
Sbjct: 159 FVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSL 218
Query: 765 NAVGYDDIGGCRKQLAQIKEMVELP 839
VGYDDIGGCR+Q+AQI+E+VELP
Sbjct: 219 AEVGYDDIGGCRRQMAQIRELVELP 243
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 35.5 bits (78), Expect = 0.010
Identities = 12/23 (52%), Positives = 20/23 (86%)
Frame = +3
Query: 771 VGYDDIGGCRKQLAQIKEMVELP 839
V Y D+GGC++Q+ +++E+VELP
Sbjct: 176 VTYGDVGGCKEQIERLREVVELP 198
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 32.3 bits (70), Expect = 0.094
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 765 NAVGYDDIGGCRKQLAQIKEMVELP 839
+AV + IGG + Q+AQI+++VELP
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELP 298
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 31.5 bits (68), Expect = 0.16
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 723 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELP 839
D +P+ + + Y DIGG Q+ +IKE VELP
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELP 210
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 31.1 bits (67), Expect = 0.22
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 777 YDDIGGCRKQLAQIKEMVELP 839
Y+ +GG KQ+ +IKE++ELP
Sbjct: 144 YEMVGGLEKQIKEIKEVIELP 164
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 540 QLNHQLAVCGLV---FHISLKDTERWI 469
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 540 QLNHQLAVCGLV---FHISLKDTERWI 469
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 510 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 400
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 771 VGYDDIGGCRKQLAQIKEMVELP 839
V Y D+GG Q +++E VELP
Sbjct: 131 VSYADVGGLDVQKQEVREAVELP 153
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 235 DPTVSLSKKQSAMTTQSWH-FHRPKW 309
DP ++ + Q + T+SWH FH +W
Sbjct: 272 DPVMARALSQGPIVTKSWHYFHYSEW 297
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 717 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELP 839
H D + I+ + + ++ IGG + Q+KEMV LP
Sbjct: 351 HIDEKTIRSTDPFANRENLDFNSIGGLEDIILQLKEMVMLP 391
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 696 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 785
V PD + D E I+REEE++A A ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 6.1
Identities = 7/23 (30%), Positives = 17/23 (73%)
Frame = +3
Query: 771 VGYDDIGGCRKQLAQIKEMVELP 839
+ + +GG +Q+ +++E++ELP
Sbjct: 129 ISFAGVGGLNEQIRELREVIELP 151
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 777 YDDIGGCRKQLAQIKEMVELP 839
Y DIGG KQ+ ++ E + LP
Sbjct: 184 YSDIGGLSKQIEELFEAIVLP 204
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 765 NAVGYDDIGGCRKQLAQIKEMVELP 839
+++ ++ +GG + Q+KEMV LP
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLP 285
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,465,341
Number of Sequences: 5004
Number of extensions: 69381
Number of successful extensions: 208
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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