Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D05
         (879 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        140   1e-33
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.025
SB_9909| Best HMM Match : AAA (HMM E-Value=0)                          36   0.057
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.40 
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)                32   0.53 
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)                     29   3.7  
SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_48561| Best HMM Match : AAA (HMM E-Value=0)                         29   5.0  
SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       28   8.7  
SB_32255| Best HMM Match : Spectrin (HMM E-Value=0.23)                 28   8.7  
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)                    28   8.7  
SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  140 bits (340), Expect = 1e-33
 Identities = 61/69 (88%), Positives = 67/69 (97%)
 Frame = +3

Query: 618 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGC 797
           D F+VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHC+GEP+KREEEEE+LN VGYDDIGGC
Sbjct: 104 DMFLVRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKREEEEESLNEVGYDDIGGC 163

Query: 798 RKQLAQIKE 824
           RKQLAQIKE
Sbjct: 164 RKQLAQIKE 172



 Score =  113 bits (273), Expect = 1e-25
 Identities = 55/81 (67%), Positives = 63/81 (77%)
 Frame = +3

Query: 228 KDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPD 407
           K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TVCIVLSDD   D
Sbjct: 15  KSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTVCIVLSDDTISD 74

Query: 408 EKIRMXXXXXXXXXXXXSDVV 470
           +KIRM             DVV
Sbjct: 75  DKIRMNRVVRMNLRVRLGDVV 95


>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 802

 Score = 36.7 bits (81), Expect = 0.025
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 711 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELP 839
           VIH  G  IK++ E  A   V +  IGG + Q+  ++EM+E+P
Sbjct: 235 VIHPFGSVIKKDSE--AKKGVSFQSIGGLKTQIQAVREMIEMP 275


>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
          Length = 400

 Score = 35.5 bits (78), Expect = 0.057
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +3

Query: 771 VGYDDIGGCRKQLAQIKEMVELPCVILHCSRLL 869
           V Y DIGGC++Q+ +++E+VE P  +LH  R +
Sbjct: 81  VTYSDIGGCKEQIDKLREVVETP--LLHPERFV 111


>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 711 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELP 839
           V+  D +P+    + E      Y DIGG   Q+ +IKE VELP
Sbjct: 357 VLSDDADPMVTVMKLEKAPQESYADIGGLDTQIQEIKESVELP 399


>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
          Length = 779

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 729 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELP 839
           +P+      E    + Y D+GG  +Q+ +++E++ELP
Sbjct: 118 DPLVYNMSHEDPGNISYSDVGGLSEQIRELREVIELP 154


>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 777 YDDIGGCRKQLAQIKEMVELP 839
           Y+ +GG  KQ+ +IKE++ELP
Sbjct: 176 YEMVGGLDKQIKEIKEVIELP 196


>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
          Length = 672

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 252 VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDN 398
           +EE + D   +V+ S      LQL R  T +LK    K ++ +++ D++
Sbjct: 141 IEERIEDSCFLVSTSTTNSTTLQLLRNMTGILKSDSDKVSIGVLVDDES 189


>SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1173

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 100 FNPSVTLPYFICSSI 56
           FNPS+T P F+CS+I
Sbjct: 339 FNPSITTPQFLCSAI 353


>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
          Length = 2021

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 771 VGYDDIGGCRKQLAQIKEMVELPCV 845
           V +D +GG  KQ+  +KEM+  P V
Sbjct: 881 VKFDSVGGLNKQIQALKEMILFPLV 905


>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 577 SRTSWRLTVRSIVTTPSWSAGACAPSSSKWSKQIHHHF 690
           +R S  + +  I ++ S SA A + SSS  S   HHH+
Sbjct: 174 ARNSTVIIIIIITSSSSSSAAAASSSSSSSSSSSHHHY 211


>SB_32255| Best HMM Match : Spectrin (HMM E-Value=0.23)
          Length = 172

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 738 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 833
           KREEE E L     + +  C+K+L  ++E++E
Sbjct: 63  KREEELELLLETRTEKLSECKKRLLDLEEIIE 94


>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
          Length = 847

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 738 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 833
           KREEE E L     + +  C+K+L  ++E++E
Sbjct: 664 KREEELELLLETRTEKLSECKKRLLDLEEIIE 695


>SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 723 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEM 827
           D +  + EEEEE    +G+D+ G   ++L +I+E+
Sbjct: 255 DDDETEDEEEEEEQPVMGWDEYGTSPQRLQRIREL 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,432,647
Number of Sequences: 59808
Number of extensions: 523863
Number of successful extensions: 1443
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)