Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_D05
(879 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 303 1e-82
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 301 3e-82
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 291 4e-79
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 36 0.027
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 36 0.027
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 33 0.25
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 31 1.0
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 31 1.0
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 31 1.3
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 31 1.3
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 1.3
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 30 1.8
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 28 9.5
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 28 9.5
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 303 bits (743), Expect = 1e-82
Identities = 133/205 (64%), Positives = 169/205 (82%)
Frame = +3
Query: 225 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 404
RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+RK+TVCI L+D+ C
Sbjct: 23 RKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKKRKDTVCIALADETCE 82
Query: 405 DEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 584
+ KIRM DV+S+ CP VKYGKRVHILP+DD+VEG+TGNLF+ YLKPY
Sbjct: 83 EPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPY 142
Query: 585 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEAL 764
F+EAYRP+ + D F+VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+KRE+EE L
Sbjct: 143 FLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEER-L 201
Query: 765 NAVGYDDIGGCRKQLAQIKEMVELP 839
+ VGYDD+GG RKQ+AQI+E+VELP
Sbjct: 202 DDVGYDDVGGVRKQMAQIRELVELP 226
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 301 bits (740), Expect = 3e-82
Identities = 132/205 (64%), Positives = 168/205 (81%)
Frame = +3
Query: 225 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 404
RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+RK+TVCI L+D+ C
Sbjct: 23 RKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKKRKDTVCIALADETCE 82
Query: 405 DEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 584
+ KIRM DV+S+ CP VKYGKRVHILP+DD+VEG+TGNLF+ YLKPY
Sbjct: 83 EPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPY 142
Query: 585 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEAL 764
F+EAYRP+ + D F+VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+KRE+EE L
Sbjct: 143 FLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEER-L 201
Query: 765 NAVGYDDIGGCRKQLAQIKEMVELP 839
+ VGYDD+GG RKQ+AQI+E+VELP
Sbjct: 202 DEVGYDDVGGVRKQMAQIRELVELP 226
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 291 bits (714), Expect = 4e-79
Identities = 126/205 (61%), Positives = 166/205 (80%)
Frame = +3
Query: 225 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 404
+K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+RK+TVCI L+D+ C
Sbjct: 24 KKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGKKRKDTVCIALADETCD 83
Query: 405 DEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 584
+ KIRM DV+S+ CP VKYG RVHILP+DD++EG++GN+F+ YLKPY
Sbjct: 84 EPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHILPLDDTIEGVSGNIFDAYLKPY 143
Query: 585 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEAL 764
F+EAYRP+ + D F+VRGGMR++EFKV+ETDP+ +C+VAPDT I C+GEPIKRE+EE L
Sbjct: 144 FLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKREDEER-L 202
Query: 765 NAVGYDDIGGCRKQLAQIKEMVELP 839
+ VGYDD+GG RKQ+AQI+E+VELP
Sbjct: 203 DEVGYDDVGGVRKQMAQIRELVELP 227
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 36.3 bits (80), Expect = 0.027
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +3
Query: 777 YDDIGGCRKQLAQIKEMVELP 839
Y DIGGC++Q+ +I+E+VELP
Sbjct: 204 YSDIGGCKEQIEKIREVVELP 224
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 36.3 bits (80), Expect = 0.027
Identities = 14/34 (41%), Positives = 27/34 (79%)
Frame = +3
Query: 771 VGYDDIGGCRKQLAQIKEMVELPCVILHCSRLLE 872
V Y+D+GGC++Q+ +++E+VELP +LH + ++
Sbjct: 165 VTYNDVGGCKEQIEKMREVVELP--MLHPEKFVK 196
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 771 VGYDDIGGCRKQLAQIKEMVELP 839
V Y+DIGGC Q +I+E VELP
Sbjct: 152 VSYNDIGGCDIQKQEIREAVELP 174
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 711 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELP 839
++ + +P+ + E Y DIGG Q+ +IKE VELP
Sbjct: 165 ILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELP 207
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 711 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELP 839
++ + +P+ + E Y DIGG Q+ +IKE VELP
Sbjct: 165 ILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELP 207
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 777 YDDIGGCRKQLAQIKEMVELP 839
YD IGG +Q+ +IKE++ELP
Sbjct: 160 YDMIGGLDQQIKEIKEVIELP 180
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 777 YDDIGGCRKQLAQIKEMVELP 839
YD IGG +Q+ +IKE++ELP
Sbjct: 160 YDMIGGLDQQIKEIKEVIELP 180
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -2
Query: 332 TTEELKLLHFGL*KCHD*VVIAD 264
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 488 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 393
RT S+ +++ HTK++ HN + L+R +I
Sbjct: 28 RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59
>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 656
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -1
Query: 537 LNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLRARCK---RF 367
L++ CG H S D + I + H F+QH + + G R R+ C+ +
Sbjct: 262 LSYMCLQCGFAVHCSCVDLPQVININRHDHRISFTQHLGPGYLNCGVCR-RSVCQFNGAY 320
Query: 366 PCGVCP 349
C VCP
Sbjct: 321 SCLVCP 326
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 771 VGYDDIGGCRKQLAQIKEMVELP 839
+G++D+GG IKEM+ELP
Sbjct: 841 LGWEDVGGVTDIKNAIKEMIELP 863
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,372,089
Number of Sequences: 28952
Number of extensions: 374738
Number of successful extensions: 1045
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -