Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_D04
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 1.3
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 3.8
08_02_0272 + 15189617-15190276,15190361-15191107 29 5.1
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 29 5.1
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 29 5.1
05_03_0469 + 14439472-14440905 29 6.7
11_04_0358 + 16725417-16725422,16725789-16725858,16727825-167286... 28 8.8
06_01_1082 - 8847795-8848033,8848511-8848724 28 8.8
05_03_0618 - 16262826-16263097,16263111-16263183 28 8.8
03_02_0950 + 12661008-12662312,12662403-12662576 28 8.8
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 8.8
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 402 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 506
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 470 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 384
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>08_02_0272 + 15189617-15190276,15190361-15191107
Length = 468
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -3
Query: 722 HDVAFVHGGLKVPVVFEGVSGAITVDDTVITRTFRVIELQVLFVLGGHDLEVNSVVF 552
HD++F HG L++P + VDDT + F ++ + L G + EV + VF
Sbjct: 300 HDISFRHGALRIP--------RLAVDDTTEHKLFSLMAFEQLHGAGAN--EVTAYVF 346
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 189 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG 359
+LY+ +++ G Y+ A+ S + G +KE K L+E+ T++ +L T G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550
Query: 360 KEIVK 374
+ +
Sbjct: 551 DPMTR 555
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 29.1 bits (62), Expect = 5.1
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Frame = -3
Query: 338 VGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSG-----------LVFTNDDTHIQ 192
V E G+P+AV D + D + +FL+ G L N D+ I
Sbjct: 705 VDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKII 764
Query: 191 LLRQYVISSWCKCGVRSQRTHGEDEGK 111
L + + C+ V S R HG +G+
Sbjct: 765 RLWKKAATP-CRAPVSSPRAHGHHQGQ 790
>05_03_0469 + 14439472-14440905
Length = 477
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 496 VTPKTKPARKSPGS--LPPCWKTTEFTSRSCPP 588
+T T+ AR PG+ +PP W+ T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219
>11_04_0358 +
16725417-16725422,16725789-16725858,16727825-16728693,
16729109-16729198,16730071-16730356,16730573-16730592
Length = 446
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 647 DDTVITRTFRVIELQVLFVLGGHDLEVNSVVFQHGGKLPGDFLAGFVFG 501
DDT V+ ++ VLGG D+ V F GG + L GF+FG
Sbjct: 155 DDTTTEDDLMVVSAELEKVLGGVDVASARVSFAMGGGVDCP-LQGFLFG 202
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 684 WYLEPSMYESDVMFFVYNREYNSV 755
W + Y DV+ F YN+EY+ V
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDV 82
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 170 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 84
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 174 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 275
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 486 IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNT 620
I F D K+K K K +EN+ + F +M+ D QYL +NT
Sbjct: 354 ILFNDMKEKGVKSGK-KCVLSMENHGIGFLLMAYNDVQYLVPNNT 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,753,633
Number of Sequences: 37544
Number of extensions: 501872
Number of successful extensions: 1579
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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