Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D03
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    29   0.69 
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   8.5  

>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 737 CXRCWGKSGNWNXWR 693
           C  CWG++G W  W+
Sbjct: 340 CVVCWGRTGGWRLWK 354


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
 Frame = -1

Query: 420  GIIEQLEQRXGFFPHFFVKD---REFQILGKESDLVHHHEIFVGFHVCVAVLA-GLDVEV 253
            G  + +E        F++K+   +E Q   K  D +HH EI++  H+    +A  L +  
Sbjct: 1029 GFKKSIEDSYTMKKRFWIKEYFLKEVQASWKTDDNLHHGEIYLRNHILSDEMANNLSILP 1088

Query: 252  LGDFVVLSFIAXXVNVVEKRQ--KLLLLFDERSXNRXRFE 139
            +     +S+ +  V  V  R+  KL+L F   +    R++
Sbjct: 1089 IRIQAWVSYDSEKVTTVCPREPFKLVLEFFGHADTNMRYK 1128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,683
Number of Sequences: 5004
Number of extensions: 43052
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)