Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D03
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
           protein C05C10.2b protein.
          Length = 1553

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 632 LDEKICYXYGIIXENE-QFVMYAXYSNSLTYPNNEXRIAYLTEDVGLXAY 778
           LD +IC  Y ++ EN+ ++++ A + N   Y   + R   + E   L  +
Sbjct: 573 LDSEICAFYRVLVENKSKYILIACHMNVHGYHRGDLRFLEINESTKLYGF 622


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
           protein C05C10.2a protein.
          Length = 1551

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 632 LDEKICYXYGIIXENE-QFVMYAXYSNSLTYPNNEXRIAYLTEDVGLXAY 778
           LD +IC  Y ++ EN+ ++++ A + N   Y   + R   + E   L  +
Sbjct: 573 LDSEICAFYRVLVENKSKYILIACHMNVHGYHRGDLRFLEINESTKLYGF 622


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,328,233
Number of Sequences: 27780
Number of extensions: 231103
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)