Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_D01
         (921 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    71   6e-11
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    38   0.36 
UniRef50_Q1YKB3 Cluster: Putative uncharacterized protein; n=1; ...    34   4.4  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 70.5 bits (165), Expect = 6e-11
 Identities = 33/58 (56%), Positives = 40/58 (68%)
 Frame = +1

Query: 217 IYGTGGLLTPLVAPVLXXXXXXXXXXXXXXXXXXYYGNLVAGSIVSQLTAAAMVAPTP 390
           IYGTGGLLTP+VAP+L                  YYGN+VAGS++SQLT+AAM+APTP
Sbjct: 17  IYGTGGLLTPIVAPMLGFGSAGIAAGSTAAAAQAYYGNVVAGSVISQLTSAAMLAPTP 74


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 37.9 bits (84), Expect = 0.36
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +1

Query: 586 DPDMIXYIDEFGQTXXRMQ 642
           DPDMI YIDEFGQT  RMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q1YKB3 Cluster: Putative uncharacterized protein; n=1;
           Aurantimonas sp. SI85-9A1|Rep: Putative uncharacterized
           protein - Aurantimonas sp. SI85-9A1
          Length = 215

 Score = 34.3 bits (75), Expect = 4.4
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +3

Query: 171 GASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNS-GRKHSRCCTSILRKFSGR-Q 344
           G  S   G  GR+        +    +G R+  + SGN  G+   R C     +  GR Q
Sbjct: 45  GEQSLAPGNSGRQITGKQKRSNNGQEAGQRSEPRHSGNERGKAEQRWCVDESNRRGGRSQ 104

Query: 345 HCVTVDCCCHGSPH 386
            CV     CHGSP+
Sbjct: 105 LCVAAAMRCHGSPN 118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,261,072
Number of Sequences: 1657284
Number of extensions: 9688773
Number of successful extensions: 15719
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15714
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84441173866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)