Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C24
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    43   7e-05
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   0.88 
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    26   8.2  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   8.2  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = +3

Query: 360 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 452
           +F +LI G +RNPS++  LFS AILGFAL+E
Sbjct: 27  IFSNLISGTSRNPSVRPHLFSMAILGFALTE 57


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 656 AHCRCNTHQSLHHYEGEXSKHSIPWLSTP 570
           A  R NT Q    Y G    HS PW S+P
Sbjct: 146 AAVRKNTEQEKMGYRGGYQMHSTPWASSP 174


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +1

Query: 136 PCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPXPHRSLRTL--TLLPNSLV 309
           P + +CH L   T  +T   + P  + TC     L SA    P  ++      +L  S++
Sbjct: 15  PSNVLCHNLHTGTLVSTFRQSSPAKNATCTTLNHLLSAQHTRPQLNIHNFGKEILDQSII 74

Query: 310 L 312
           L
Sbjct: 75  L 75


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +1

Query: 109 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 222
           + VC    R C ++ +   L   + +C  +    DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,006
Number of Sequences: 5004
Number of extensions: 48402
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)