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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C24
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678...    32   0.70 
03_06_0422 + 33818887-33819996                                         31   1.2  
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462     30   2.1  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     30   2.1  
07_03_1191 + 24690936-24691029,24691184-24691377                       29   5.0  
04_04_1030 - 30249160-30250403,30250787-30251666                       29   5.0  
09_01_0049 + 847576-847854                                             29   6.6  
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539...    28   8.7  
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766...    28   8.7  

>03_02_0994 -
           13067254-13067379,13067483-13067521,13067824-13067893,
           13068025-13068116,13068237-13068319,13068590-13068633,
           13068682-13068800,13068883-13068915,13069152-13069239,
           13069364-13069413
          Length = 247

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 115 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 243
           VC  T++P +QVC+   +C G   CS+   + D   C    LC
Sbjct: 51  VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92


>03_06_0422 + 33818887-33819996
          Length = 369

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = -2

Query: 503 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDXSNTSSGTS 333
           E   ++ER  + E+T SL    + N   E ++L+G       D+  +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206


>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
          Length = 106

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 115 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 216
           +CRQ +  C   CH++ LC G  + S   P T G
Sbjct: 38  ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
 Frame = -2

Query: 551 LICRMAVVGFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDE 372
           L C + +   +   +  ++       +T   +   Q  T NG  E L   GG   ++ + 
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390

Query: 371 GAEDXSNTSSG--TSYSHXRXTSTNEXGSR 288
           GAE  S+ +    T+ +    T T+  G++
Sbjct: 391 GAESVSSNARAQPTTTNGGEETKTSNAGAQ 420


>07_03_1191 + 24690936-24691029,24691184-24691377
          Length = 95

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 115 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 225
           VC++T+  C+Q  CH + L  G T  S    + D  CC
Sbjct: 38  VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75


>04_04_1030 - 30249160-30250403,30250787-30251666
          Length = 707

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -3

Query: 277 LVTDVVLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFI 98
           +V D  ++G +C+E  R  +       Y CK +  C   EDG  G R + SGG     +I
Sbjct: 238 MVLDWYIQGGNCKEASRSRQ------TYMCKENSYCYEVEDG-AGYRCNCSGGYTGNPYI 290

Query: 97  RC 92
            C
Sbjct: 291 GC 292


>09_01_0049 + 847576-847854
          Length = 92

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 190 SSTHPYTDGTCCPYTALCSAVLPXPHRSLRTLTLLPNSLVLVXRXW 327
           +ST+  +D      T  C AV P P  ++R    +P +  L+ R W
Sbjct: 46  ASTYAASDSASSAPTDACMAVFPPPAPAIRARHSIPVAYRLLPRAW 91


>11_01_0662 -
           5389746-5390548,5390727-5391368,5391624-5391659,
           5392314-5392377
          Length = 514

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 512 NSLESEEQQERHHKTEQTHSLRQ 444
           NS+   E QE+ H  E+TH LRQ
Sbjct: 62  NSIFYSESQEQKHVKEETHRLRQ 84


>05_03_0041 -
           7662094-7662138,7662269-7662340,7663144-7663179,
           7663356-7663449,7663533-7663681,7664525-7664864,
           7666417-7666748,7667348-7667821
          Length = 513

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 24/73 (32%), Positives = 33/73 (45%)
 Frame = -2

Query: 257 GRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVWRQTAFCFYKVRRATT 78
           G T  QRA       S++  V+LQ V  +Q   +W   +    V++  +FC Y   RA  
Sbjct: 87  GLTPAQRAESWDNYCSLFS-VVLQGVVNMQLPNQWLWDMVDEFVYQFQSFCQY---RAKL 142

Query: 77  KNTEKEETGLWNQ 39
           KN   EE  L  Q
Sbjct: 143 KNKTHEEIALLKQ 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,209,579
Number of Sequences: 37544
Number of extensions: 359245
Number of successful extensions: 1041
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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