Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_C24
(885 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 32 0.70
03_06_0422 + 33818887-33819996 31 1.2
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 30 2.1
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 30 2.1
07_03_1191 + 24690936-24691029,24691184-24691377 29 5.0
04_04_1030 - 30249160-30250403,30250787-30251666 29 5.0
09_01_0049 + 847576-847854 29 6.6
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539... 28 8.7
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766... 28 8.7
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 115 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 243
VC T++P +QVC+ +C G CS+ + D C LC
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>03_06_0422 + 33818887-33819996
Length = 369
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -2
Query: 503 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDXSNTSSGTS 333
E ++ER + E+T SL + N E ++L+G D+ +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 115 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 216
+CRQ + C CH++ LC G + S P T G
Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Frame = -2
Query: 551 LICRMAVVGFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDE 372
L C + + + + ++ +T + Q T NG E L GG ++ +
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390
Query: 371 GAEDXSNTSSG--TSYSHXRXTSTNEXGSR 288
GAE S+ + T+ + T T+ G++
Sbjct: 391 GAESVSSNARAQPTTTNGGEETKTSNAGAQ 420
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 115 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 225
VC++T+ C+Q CH + L G T S + D CC
Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75
>04_04_1030 - 30249160-30250403,30250787-30251666
Length = 707
Score = 29.1 bits (62), Expect = 5.0
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -3
Query: 277 LVTDVVLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFI 98
+V D ++G +C+E R + Y CK + C EDG G R + SGG +I
Sbjct: 238 MVLDWYIQGGNCKEASRSRQ------TYMCKENSYCYEVEDG-AGYRCNCSGGYTGNPYI 290
Query: 97 RC 92
C
Sbjct: 291 GC 292
>09_01_0049 + 847576-847854
Length = 92
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 190 SSTHPYTDGTCCPYTALCSAVLPXPHRSLRTLTLLPNSLVLVXRXW 327
+ST+ +D T C AV P P ++R +P + L+ R W
Sbjct: 46 ASTYAASDSASSAPTDACMAVFPPPAPAIRARHSIPVAYRLLPRAW 91
>11_01_0662 -
5389746-5390548,5390727-5391368,5391624-5391659,
5392314-5392377
Length = 514
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 512 NSLESEEQQERHHKTEQTHSLRQ 444
NS+ E QE+ H E+TH LRQ
Sbjct: 62 NSIFYSESQEQKHVKEETHRLRQ 84
>05_03_0041 -
7662094-7662138,7662269-7662340,7663144-7663179,
7663356-7663449,7663533-7663681,7664525-7664864,
7666417-7666748,7667348-7667821
Length = 513
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/73 (32%), Positives = 33/73 (45%)
Frame = -2
Query: 257 GRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVWRQTAFCFYKVRRATT 78
G T QRA S++ V+LQ V +Q +W + V++ +FC Y RA
Sbjct: 87 GLTPAQRAESWDNYCSLFS-VVLQGVVNMQLPNQWLWDMVDEFVYQFQSFCQY---RAKL 142
Query: 77 KNTEKEETGLWNQ 39
KN EE L Q
Sbjct: 143 KNKTHEEIALLKQ 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,209,579
Number of Sequences: 37544
Number of extensions: 359245
Number of successful extensions: 1041
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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