Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C24
         (885 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   6e-11
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    29   3.8  
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)          29   6.6  
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          29   6.6  
SB_6118| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               28   8.7  
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)                    28   8.7  

>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = +3

Query: 360 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 452
           VFGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 125 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 155


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 533 VVGFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 426
           +V  LK    ESEE  E  H  EQ H  +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242


>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 202 PYTDGTCCPYTALCSAVLPXPHRSLRTLTLLPNSLVLVXR 321
           PYT  T CP T      LP  H + R    LP++ +L  R
Sbjct: 40  PYTPLTECPSTYRAPLYLPSTHSTYRAPLYLPSAPLLTER 79


>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
          Length = 351

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 184 TCSSTHPYTDGTCCPYTALCSAV 252
           +CSS H   DGTC  ++  C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 184 TCSSTHPYTDGTCCPYTALCSAV 252
           +CSS H   DGTC  ++  C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133


>SB_6118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 217 TCCPYTAL---CSAVLPXPHRSLRTLTLLPNSLV 309
           TC P T L   C+ V P P+ ++ TLT L  SLV
Sbjct: 4   TCTPVTLLFISCTPVHPPPNSTVLTLTPLKKSLV 37


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 253  GPHCRELCRDSRYHLCMG-GYCCKWSHQC 170
            G  C +LC+   +++C G G C +W+  C
Sbjct: 5395 GEDCGKLCKGGIWNVCNGHGTCNRWTGDC 5423


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 560  H*NLICRMAVVGFLKVNSLESEEQQERHHKTEQTHSLRQGE 438
            H   +CR   +G++KV    S+ +   + K+EQT +++  +
Sbjct: 3310 HRRTVCRARSIGWIKVRRAISQGKFREYIKSEQTQAIKMAK 3350


>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
          Length = 201

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 241 RELCRDSRYHLCMGGYCCKWSHQCR 167
           R  CR    HLC+G   C+W  Q R
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,109,327
Number of Sequences: 59808
Number of extensions: 420183
Number of successful extensions: 1459
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)