Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_C24
(885 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 64 2e-10
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 64 2e-10
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 64 2e-10
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 29 5.8
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 29 5.8
AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical ... 29 5.8
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 28 7.7
Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical p... 28 7.7
Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical p... 28 7.7
Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical pr... 28 7.7
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/31 (93%), Positives = 31/31 (100%)
Frame = +3
Query: 360 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 452
VFG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 45 VFGALVIGYARNPSLKQQLFSYAILGFALSE 75
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/31 (93%), Positives = 31/31 (100%)
Frame = +3
Query: 360 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 452
VFG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 45 VFGALVIGYARNPSLKQQLFSYAILGFALSE 75
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/31 (93%), Positives = 31/31 (100%)
Frame = +3
Query: 360 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 452
VFG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 69 VFGALVIGYARNPSLKQQLFSYAILGFALSE 99
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +1
Query: 169 CTGATTCSSTHPYTDGTCCPYTALCSAVLP 258
C+ C + D CCPY + C A P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +1
Query: 109 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 234
N C P + C+ T C+S + +G CCP T
Sbjct: 106 NTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147
>AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical
protein F28A10.1 protein.
Length = 311
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 496 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 368
KSSR I ++ I KP E N C+ + FLA PM E
Sbjct: 21 KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 540 PTYEVSVYTIWSGQPWNRMFGXLTLIVMQ 626
P + VSVY I PWN +F ++V Q
Sbjct: 29 PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57
>Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 267 MWXWKDRTAESCVGTAGTICVWVGTAASG-RTSAELQK 157
+W CVG GT+C + +G +TS +LQK
Sbjct: 364 VWLTASPLLAECVGVLGTVCDVIQLGVTGSKTSPDLQK 401
>Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 267 MWXWKDRTAESCVGTAGTICVWVGTAASG-RTSAELQK 157
+W CVG GT+C + +G +TS +LQK
Sbjct: 405 VWLTASPLLAECVGVLGTVCDVIQLGVTGSKTSPDLQK 442
>Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 267 MWXWKDRTAESCVGTAGTICVWVGTAASG-RTSAELQK 157
+W CVG GT+C + +G +TS +LQK
Sbjct: 364 VWLTASPLLAECVGVLGTVCDVIQLGVTGSKTSPDLQK 401
>Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 267 MWXWKDRTAESCVGTAGTICVWVGTAASG-RTSAELQK 157
+W CVG GT+C + +G +TS +LQK
Sbjct: 405 VWLTASPLLAECVGVLGTVCDVIQLGVTGSKTSPDLQK 442
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,820,733
Number of Sequences: 27780
Number of extensions: 299923
Number of successful extensions: 925
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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