Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C24
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.23 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.40 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 125 WRQTAFCFYKVRRATTKNTEKEETGLWNQXLRI 27
           W Q  FC+++   AT KN  +    L    +R+
Sbjct: 533 WFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV 565



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 524 FLKVNSLESEEQQERHHK-TEQTHSLRQ 444
           F++ +SL  ++QQ++HH+ +   H+  Q
Sbjct: 91  FMQQHSLYLQQQQQQHHQDSSSEHASNQ 118


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -2

Query: 503 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDXSNTSSGTS 333
           + ++QQ+R  + ++   LR  E +  V E     GG        G+ D S  ++ T+
Sbjct: 165 QQQQQQQRQQQRQEERRLRPDEIKVEVGEDEFANGGAARDESKAGSTDASTPATVTT 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,347
Number of Sequences: 438
Number of extensions: 3426
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)