Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C24
         (885 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    45   6e-05
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   9.5  
At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 ...    28   9.5  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = +3

Query: 360 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 452
           VF SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 38  VFSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 96  LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 206
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


>At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 /
           alpha-SNAP1 (ASNAP1) identical to alpha-soluble NSF
           attachment protein 1 (Alpha-SNAP1) (N-
           ethylmaleimide-sensitive factor attachment protein,
           alpha 1) (Swiss-Prot:Q9LXZ5) [Arabidopsis thaliana]
          Length = 381

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = -2

Query: 644 CNTHQSLHHYEG-EXSKHSIPWLSTP-DSIH*NLICRMAVVGFLKVNSLESE-EQQERHH 474
           C  H+   +YE  E  + +I +  T  +      +   A    LKV    S+ EQQ R  
Sbjct: 167 CMDHEIAEYYESDEMFEQAIAYYETAAEFFQIEEVTTSANQCNLKVAQYASQLEQQSRFM 226

Query: 473 KTEQTHSLRQGETQNGV*EQLLLEG 399
           KT+  HSL     + GV   LL  G
Sbjct: 227 KTQARHSLNNKLLKYGVKGHLLTAG 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,903,284
Number of Sequences: 28952
Number of extensions: 272106
Number of successful extensions: 749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)