Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C22
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    28   2.1  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    27   4.8  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    27   4.8  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   8.4  

>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 526 KSPGSLPPCWKTTEFTXKIMSTEDKQYLKLDNTKGSSDDRII 651
           + PG LP  +K T+       TED    K+  +K  SD++++
Sbjct: 139 QKPGRLPFAYKHTKQVDLFYETEDNSRDKIRVSKNQSDNQVL 180


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 714 FVHGGLKVPVXFEGVSGAITVDDTVIT 634
           F H  +       G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -2

Query: 258 FRYSEHLAIAXSYSPMTTXIYSXSASTXSVLGASVALEASAHTARTKA 115
           FR+  HL      S +T+ +Y+ +  T     ++++   +A  A T A
Sbjct: 21  FRHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAISTNGAAKEAATAA 68


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +1

Query: 556 KTTEFTXKIM-STEDKQYLKLDNTKGSSDDRIIYGDSTADTFKXHWYLEPSMY 711
           KT E   K + ST+ K    L  +  +   RI+ G  T    K HW++    Y
Sbjct: 524 KTAEAASKALKSTQRKIEQDLKRSTTADTQRILLGRKTFFFEKFHWFISSEGY 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,306
Number of Sequences: 5004
Number of extensions: 43693
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)