Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C21
         (896 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   3.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.9  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 317 YPYSKSIYDXPIAAAERXTVPGYRYLPVHREIYGYSPRPIYAHNYPR 457
           +PY+ ++Y  P  AA          LP+H       P P+Y H+Y R
Sbjct: 135 WPYA-AVYTDPAFAASIFHAAATS-LPLHYP----PPPPVYTHHYAR 175


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 586 WVQPXDGSQPV 554
           WV P DG+ P+
Sbjct: 916 WVAPFDGNSPI 926


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = +1

Query: 352 RCR*EXYGTRLPLPACPSRDLRLLPAPYLCPQLPSLSRLLQAXLPRAXTRATWSXSLXRP 531
           RC        L  P CPS +  L     L   +P+LS +  A  P     A  + +L  P
Sbjct: 83  RCNSRESSDSLVQPRCPSGESMLSERAALLRGVPTLSPVGVALPPTLPAAA--AAALLPP 140

Query: 532 QGXA 543
           Q  A
Sbjct: 141 QTAA 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,011
Number of Sequences: 336
Number of extensions: 1839
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)