Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_C19
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 32 0.13
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 31 0.17
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 29 1.2
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 27 2.7
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 3.6
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 3.6
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 4.8
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.3
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual 26 6.3
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 267 SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNFR--THHGRKLCQDHLQK 437
+II V+N I+D+ + ++C ++W G + +R ++ ++ +H K H+++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYSNLYKKLSHRDAKSIYHHVRR 305
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 31.5 bits (68), Expect = 0.17
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +2
Query: 584 HNTKYNQYLKMSTTTCNCXSRDRVVYGGNSADSTREXWF-FQ-PAKYENXVLFFIYNRQF 757
+++ YN+ M T++C+C S + YGGN A E F F+ P + + +++
Sbjct: 47 YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEEFSFHFRGPIELKRFAVYYPDTSNA 105
Query: 758 NDALELGTNRERLGR 802
+L +N + + R
Sbjct: 106 LSSLRKRSNNQHMKR 120
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 584 HNTKYNQYLKMSTTTCNCXSRDRVVYGGNSA 676
HN +N + + S T+ + SR+ V+ GNS+
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 120 MLAASAGVV--ELSADTSNQALEEXLYNSILTGDYDSAVRQSLEYEXQGKGSII 275
++ A+AG+ LS + N+ + + L G Y +A ++ QGKGS+I
Sbjct: 91 VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = -1
Query: 383 WEVLSNNFLS--VADPQL---VAVLHGVPSLVNDQVVNYILD 273
W+VL +++L+ ++ P V LHGV + VN V +YI D
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYIKD 229
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = +3
Query: 168 NQALEEXLYNSILTGDYDSAVRQSLEYEXQGKGSIIQNVVNNLIIDKRRNTMEYCYKLWV 347
N LE D D R ++ + Q +++++ NL I N +EY LW
Sbjct: 414 NDMLESFQKGVFRINDLDCLGRTNV-IQYQISRLVLKDIFFNLQIGVTFNILEYLRHLWS 472
Query: 348 GNGQEIVR 371
NG I +
Sbjct: 473 NNGDAIAK 480
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 4.8
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +1
Query: 124 SPPARA--SLNXPRTLLTKPSRXNCTTASSPATTTVLSVRAWNMXAK---ARAP 270
SPP + S N P TKPS +T S A TT S ++++ K AR+P
Sbjct: 463 SPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATSFSIINKEKPARSP 516
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 644 RDRVVYGGNSADSTREXWFFQPAKYENXVLFFIYN 748
R R+V G ++A + + W F +Y ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195
>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 6.3
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 267 SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNFRTHH--GRKLCQDHLQKL 440
+I +N +NN ++ R+ + Y VG+G NFR +H G +L H +
Sbjct: 38 TIPKNYLNNSTVENRKYKTMFGYVTRVGDGD---------NFRFYHTPGGRLLGWHWLRK 88
Query: 441 QPRSEARFHNQSLEMR 488
P S + N+++ +R
Sbjct: 89 VPCSRSDLSNETISVR 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,168
Number of Sequences: 5004
Number of extensions: 57507
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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