Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C19
         (896 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_42961| Best HMM Match : DNA_mis_repair (HMM E-Value=1.8e-19)        29   5.1  

>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -3

Query: 351 CRPTACSSTPWCSVSCQ*SGC*LHSG*WSPCLGXHIPSSDGQHCRSRR*GCCCTVXPRGL 172
           C+   CS++  C  SC   GC L+    +         +    C+SR  G  CT    G 
Sbjct: 224 CQQVVCSASGKCDQSCDGEGCNLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCT--GSGC 281

Query: 171 G*KCP 157
             KCP
Sbjct: 282 DVKCP 286


>SB_42961| Best HMM Match : DNA_mis_repair (HMM E-Value=1.8e-19)
          Length = 727

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 885 GRLERXNEPXSRCQEDRXXHHXVQRPCGLPRRSRFVPSS 769
           G + + +    R   DR      +RPC LP+ SR VP +
Sbjct: 142 GFISKADHGSGRSSSDRQFFFINKRPCDLPKVSRVVPDT 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,521,358
Number of Sequences: 59808
Number of extensions: 458747
Number of successful extensions: 1097
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)