Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C19
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical ...    29   4.5  
AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical ...    29   4.5  
AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical ...    29   4.5  
AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical ...    29   6.0  
AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical ...    29   6.0  

>AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.5 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 115 CACSPPARASLNXPRTLLTKPSRXNCTTASSPATTTVLS 231
           C C+P  + S +  RT  T+P + +C+  ++    T  S
Sbjct: 29  CGCAPKVQPSCSCQRTTYTQPQQYSCSCQNTAPVQTSCS 67


>AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.4 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 115 CACSPPARASLNXPRTLLTKPSRXNCTTASSPATTTVLS 231
           C C+P  + S +  RT  T+P + +C+  ++    T  S
Sbjct: 29  CGCAPKVQPSCSCQRTTYTQPQQYSCSCQNTAPVQTSCS 67


>AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical
           protein Y64G10A.1 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 115 CACSPPARASLNXPRTLLTKPSRXNCTTASSPATTTVLSVRAWNMXAKARAP 270
           CA +  A ++LN  RT L+   + NC     P TT + +  A N    + AP
Sbjct: 38  CATTCGACSNLNYTRTCLSDGLK-NCACVGEPTTTMLCNTIACNYPRGSEAP 88


>AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.6 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 115 CACSPPARASLNXPRTLLTKPSRXNCTTASSPATTTVLS 231
           C C+P  + S +  RT  T+P + +C+  ++    T  S
Sbjct: 29  CGCAPKIQPSCSCQRTTYTQPQQYSCSCQNTAPVQTSCS 67


>AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.3 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 115 CACSPPARASLNXPRTLLTKPSRXNCTTASSPATTTVLS 231
           C C+P  + S +  RT  T+P + +C+  ++    T  S
Sbjct: 29  CGCAPKIQPSCSCQRTTYTQPQQYSCSCQNTAPVQTSCS 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,065,050
Number of Sequences: 27780
Number of extensions: 337556
Number of successful extensions: 1039
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)