Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C19
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.6  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   3.8  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   3.8  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   3.8  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   3.8  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   3.8  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   3.8  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   3.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   8.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 180 EEXLYNSILTGDYDSAVRQSLEYEXQGKGSIIQNVVNNLIIDKRRNTMEYCYKL 341
           E+ + ++IL G YD+ +R S E    G   +  N+    I      TMEY  +L
Sbjct: 32  EKEVLDNIL-GGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQL 84


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 557 ENNRVYFKIHNTKYNQYLKMSTTTCNCXSRDR 652
           E NR Y K+HN K  + L    T+ N  SR R
Sbjct: 14  EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 557 ENNRVYFKIHNTKYNQYLKMSTTTCNCXSRDR 652
           E NR Y K+HN K  + L    T+ N  SR R
Sbjct: 14  EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 557 ENNRVYFKIHNTKYNQYLKMSTTTCNCXSRDR 652
           E NR Y K+HN K  + L    T+ N  SR R
Sbjct: 14  EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 557 ENNRVYFKIHNTKYNQYLKMSTTTCNCXSRDR 652
           E NR Y K+HN K  + L    T+ N  SR R
Sbjct: 14  EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 557 ENNRVYFKIHNTKYNQYLKMSTTTCNCXSRDR 652
           E NR Y K+HN K  + L    T+ N  SR R
Sbjct: 14  EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 557 ENNRVYFKIHNTKYNQYLKMSTTTCNCXSRDR 652
           E NR Y K+HN K  + L    T+ N  SR R
Sbjct: 14  EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 557 ENNRVYFKIHNTKYNQYLKMSTTTCNCXSRDR 652
           E NR Y K+HN K  + L    T+ N  SR R
Sbjct: 14  EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 645 RLXQLQVVVLIFKYWLYLVLWIL 577
           +L + QV++ I   W Y + W L
Sbjct: 156 KLSRGQVILFIVLIWTYTIPWAL 178


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 180 EEXLYNSILTGDYDSAVRQSLEYEXQGKGSIIQNVVNNLIIDKRRNTMEYCYKL 341
           E+ + ++IL G YD+ +R S E    G   +  N+    I       MEY  +L
Sbjct: 32  EKEVLDNIL-GGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQL 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,174
Number of Sequences: 438
Number of extensions: 4546
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)