Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C19
         (896 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    32   0.59 
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    29   3.2  
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    29   3.2  
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    29   3.2  
At1g49920.1 68414.m05598 zinc finger protein-related weak simila...    28   9.7  

>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 294 LIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNF 392
           +++D +    EY  KL + +G +   KYFPL F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 147 ELSADTSNQALE-EXLY--NSILTGDYDSAVRQSLEYEXQGKGSIIQNVVNNLIIDKRR 314
           +L  +  NQ+ E E L+  NS L+  Y  ++  S ++E Q K  + QNV    ++DK R
Sbjct: 285 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 147 ELSADTSNQALE-EXLY--NSILTGDYDSAVRQSLEYEXQGKGSIIQNVVNNLIIDKRR 314
           +L  +  NQ+ E E L+  NS L+  Y  ++  S ++E Q K  + QNV    ++DK R
Sbjct: 286 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 120 MLAASAGVVELSADTSNQALEEXLYNSILTGDYD 221
           +LA + G  ELS   + Q +E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSPSPAEQEIESFLYNAINMGFFD 103


>At1g49920.1 68414.m05598 zinc finger protein-related weak
           similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
           mays] GI:1857256; contains Pfam profiles PF03108: MuDR
           family transposase, PF04434: SWIM zinc finger
          Length = 785

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = +3

Query: 162 TSNQALEEXLYNSILTGDYDSAVRQSLEYEXQGKGSIIQNVVNNLIIDKRRNTMEYCYKL 341
           +SN  L +  Y+S LT D + A  + L +         Q+    +++D +    +Y  KL
Sbjct: 339 SSNGLLVDWQYDS-LTHDPEHASFRGLFWAFSQSIQGFQHCRPLIVVDTKNLGGKYKMKL 397

Query: 342 WVGNGQEIVRKYFPLNF 392
            + +  +   +YFPL F
Sbjct: 398 MIASAFDATNQYFPLAF 414


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,149,024
Number of Sequences: 28952
Number of extensions: 311563
Number of successful extensions: 748
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)