Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_C17
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 2.1
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 2.7
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 27 4.8
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 27 4.8
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 26 6.3
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.3
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 26 8.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 8.3
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.6
Identities = 26/99 (26%), Positives = 43/99 (43%)
Frame = +1
Query: 493 SAT*IASPTRSSHTVPNWTLITLDLPILFTATAANISPTLHTTTSTESLCLMWSTPKRRW 672
SAT ++ +S +P+ T + L + TA + S T T+ ++ + STP
Sbjct: 268 SATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSV 327
Query: 673 PPGV*FSGS*QSSTPLMPAKSTTMSSRC*SKTVVTGTTT 789
+ + SSTPL STT +S + +TT
Sbjct: 328 SSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTT 366
Score = 25.8 bits (54), Expect = 8.3
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 580 TATAANISPTLHTTTSTESLCLMWSTPKRRWPPGV*FSGS*QSSTPLMPAKSTTMSSRC* 759
++T ++ +P + ++T + ++ ++ S SSTPL A STT +S
Sbjct: 246 SSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASS 305
Query: 760 SK-TVVTGTTT 789
+ T V TTT
Sbjct: 306 TPLTSVNSTTT 316
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 1.6
Identities = 24/93 (25%), Positives = 39/93 (41%)
Frame = +1
Query: 508 ASPTRSSHTVPNWTLITLDLPILFTATAANISPTLHTTTSTESLCLMWSTPKRRWPPGV* 687
+S SS + + T + PI ++ + +P +T S + ST PP +
Sbjct: 1599 SSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPP-IT 1657
Query: 688 FSGS*QSSTPLMPAKSTTMSSRC*SKTVVTGTT 786
S SSTP+ + S+ S TVV +T
Sbjct: 1658 SSTVVNSSTPITSSTVVNTSTPITSSTVVNSST 1690
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 2.1
Identities = 24/91 (26%), Positives = 39/91 (42%)
Frame = +1
Query: 505 IASPTRSSHTVPNWTLITLDLPILFTATAANISPTLHTTTSTESLCLMWSTPKRRWPPGV 684
I+S T + T T T +L+T+T +P T +T + STP +
Sbjct: 516 ISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTI 575
Query: 685 *FSGS*QSSTPLMPAKSTTMSSRC*SKTVVT 777
S + +STP+ TT +S + T +T
Sbjct: 576 -SSSTPVTSTPVTTTNCTTSTSVLYTSTPIT 605
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 438 ISRNYKDNRSAVPWFPRRIRDLDRFANQILSYGAE-LDSDHPGFTD 572
I+RNY D + +PW R + + D L + E LD DH G D
Sbjct: 512 ITRNYLDWITQLPWGKRSVENFD------LDHAKEVLDRDHYGLKD 551
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 183 CHLPSILACREASQTWV 133
CH P I+AC S+ W+
Sbjct: 676 CHRPLIIACHAESRNWI 692
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 313 TLNQDLPQGVQAMSSWLN 366
TLN LP G+Q M+ +LN
Sbjct: 442 TLNNGLPMGIQIMAQYLN 459
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 507 RFANQILSYGAELDSDHPGFTDPVYRDRRKY 599
R + +SY E +SD P F D + RR+Y
Sbjct: 15 RSGDTFVSYEIETESDLPVFEDKKFSVRRRY 45
>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 78 TPLPATEKEMDITAKQIEQPTSGSPP 155
TP T+KE D + K+ E T SPP
Sbjct: 25 TPSEFTKKEEDSSTKESELQTRSSPP 50
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 372 HGSGDFGAALEELKKNVGYLNIISRNYKDN 461
H +F EE +K GY N + RN +DN
Sbjct: 609 HFVAEFLGETEEAEKLAGYENAMLRNLEDN 638
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +3
Query: 93 TEKEMDITAKQIEQPTSGSPPDKPKLMEGGNYIREGRDSTKSTWLLISPAAPDE 254
++ + T ++++ +G PP PK + ++I+ T P PDE
Sbjct: 76 SQAQRGATLQELDYNKAGDPPILPKQAKDDHHIKRSSSETADFTPFRIPINPDE 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,002,818
Number of Sequences: 5004
Number of extensions: 91826
Number of successful extensions: 263
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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