Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_C17
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168... 31 1.2
03_02_0610 + 9834083-9834368,9834495-9834556,9834695-9834787,983... 31 1.6
02_05_0953 - 33027007-33029079 31 1.6
02_05_0956 - 33064104-33066425 30 2.2
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365... 29 3.8
08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656... 29 3.8
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 29 3.8
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184... 29 3.8
04_01_0322 - 4298733-4299524 29 5.0
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 29 6.6
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788 28 8.7
04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410 28 8.7
02_01_0157 - 1090653-1090886,1091205-1091361,1091538-1091638,109... 28 8.7
>03_05_0761 -
27515441-27515650,27515967-27516074,27516666-27516839,
27517185-27517469,27517688-27517920,27519422-27520139
Length = 575
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +3
Query: 357 MVECEHGSGDFGAALEELKKNVGYLNIISRNYKDNRSAVPW 479
+V+CE G++G+ L ELKK + +LN ++ + NR ++ W
Sbjct: 243 LVKCEQWGGNYGSKLNELKK-MWFLNRVAG--QRNRGSMDW 280
>03_02_0610 +
9834083-9834368,9834495-9834556,9834695-9834787,
9835689-9835805,9835972-9836055,9836198-9836293,
9836368-9836445,9836548-9836637,9836733-9836800,
9836940-9837021,9838203-9838289
Length = 380
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 258 GSLARYLGIFSSHGVNLSHIESRSSTRRP 344
G L + LG+F+ +NL+ IESR +RP
Sbjct: 284 GQLFKALGVFALREINLTKIESRPHKKRP 312
>02_05_0953 - 33027007-33029079
Length = 690
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 572 SCLPRPPQIFRRHCIQLQARRASALC 649
S P PP+ FR HC+ ++ A+A C
Sbjct: 75 SSFPPPPRTFRGHCVSTRSFNATAYC 100
>02_05_0956 - 33064104-33066425
Length = 773
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 578 LPRPPQIFRRHCIQLQARRASALC 649
LP PP FR HCI + A+A C
Sbjct: 172 LPPPPSTFRGHCISTPSFNATAYC 195
>11_04_0272 -
15631598-15631898,15633162-15633291,15636394-15636544,
15636632-15636730,15636912-15637063,15637079-15637301
Length = 351
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -1
Query: 206 ITTLADVVATFHQFWLVGRRARRGLFNLLRRDV-HFFFCCWKRRV 75
+T +VVA FHQF L+G G ++ ++D+ F C++R++
Sbjct: 119 LTIFREVVAMFHQFVLIG---GEGALSVEKQDILGTFVLCYRRQI 160
>08_02_1382 +
26565137-26565210,26565330-26565468,26565489-26565603,
26565761-26565828,26565907-26566551,26566927-26567031,
26567115-26567465
Length = 498
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 249 DEAGSLARYLGIFSSHGVNLSHIESRSSTRRPGYEFMVECEHGSGDFGAALEELKKNVG 425
D G L+ IF HG++++H E + R F V G A+E ++ +G
Sbjct: 392 DRVGLLSDVTRIFREHGLSVTHAEVATRGARAANVFYVVAASGEPVEAHAVEAVRAEIG 450
>03_02_1012 + 13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 663 EEVATWGVVFRKLTELYPTHACKEHNHVFPLLIENCGYRDDHIPQLEDVSNFLRDST 833
+EV + ++ + E K+ N V L+++ +DDH+ + EDV + L D T
Sbjct: 1255 KEVTVYRLICKDTIEEKILQRAKQKNAVQELVMKGKHVQDDHLMRQEDVVSLLIDDT 1311
>01_06_1731 +
39516897-39517632,39517744-39517912,39517985-39518488,
39518619-39518747,39519849-39519990,39520082-39520453
Length = 683
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = -3
Query: 783 RPCNHSFRSAAGRHGCALCR-HEWGRALSTSGKLHPRWPPPLWCTPH 646
R H+ +H CR + A + + P WPPP W PH
Sbjct: 146 RSAEHAVTGVREQHIRQQCRLGQLYAAAAAAAASSPTWPPPAWDWPH 192
>04_01_0322 - 4298733-4299524
Length = 263
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 714 GRALSTSGK-LHPRWPPPLWCTP 649
G+A+S G H WPPP W TP
Sbjct: 237 GKAMSIPGLGEHLSWPPPAWFTP 259
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 732 LCRHEWGRALSTSGKLHPRWPPPLWCTPHKAEALRACSC 616
L RH L S +L P PPP C + A R C C
Sbjct: 65 LLRHS-AHFLLLSARLRPPPPPPRCCHRRRRVAARCCCC 102
>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
Length = 326
Score = 28.3 bits (60), Expect = 8.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 696 SGKLHPRWPPPLWCTPH 646
S +L WPPP+W TP+
Sbjct: 299 SPQLWSNWPPPVWMTPN 315
>04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410
Length = 1279
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = -2
Query: 469 ADRLSL*FLEIIFRYPTFFFSSSRAAPKSPEPCSHSTMNS*PGRLVEDLDSMWLRLTP*E 290
A ++ +LE + FF ++ ++P SP+ + +T + +D D++ L
Sbjct: 84 ASKMRRLYLEAVLSQEVAFFDAAPSSPSSPQAQAQATTFRVISTVSDDADAIQDFL---G 140
Query: 289 EKMPKYLANEPASSGA 242
EK+P LAN GA
Sbjct: 141 EKLPMVLANATLFFGA 156
>02_01_0157 -
1090653-1090886,1091205-1091361,1091538-1091638,
1091786-1091900,1092940-1093003,1093107-1093209,
1093331-1093432,1093542-1093617,1093672-1093790,
1093918-1094100,1094378-1094499,1095605-1095944
Length = 571
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 554 SPWIYRSCLPR-PPQIFRRHCIQLQARRASALCGVHQRGGG 673
SPW+ LP PP++ R H + + RASA G G
Sbjct: 3 SPWLRIRLLPEVPPRLLRPHLRRTLSVRASASASASPDGAG 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,909,158
Number of Sequences: 37544
Number of extensions: 697116
Number of successful extensions: 2175
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2175
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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