Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C17
         (893 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3716| Best HMM Match : No HMM Matches (HMM E-Value=.)               81   9e-16
SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)                    31   1.3  
SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084)              31   1.7  
SB_48827| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_14470| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_21967| Best HMM Match : BAG (HMM E-Value=1.7e-18)                   29   3.8  
SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5)                  29   3.8  
SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)                      29   6.7  
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)             28   8.9  
SB_40255| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)                     28   8.9  

>SB_3716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 81.4 bits (192), Expect = 9e-16
 Identities = 41/88 (46%), Positives = 60/88 (68%), Gaps = 3/88 (3%)
 Frame = +3

Query: 306 LSHIESRSSTR-RPGYEFMVECE--HGSGDFGAALEELKKNVGYLNIISRNYKDNRSAVP 476
           ++HIESR S   +  Y+F  +CE  HG+      ++ LKK    + ++S    D++ +VP
Sbjct: 1   MTHIESRPSKACKTRYDFFADCEGLHGAS-LNHFVDALKKRAVNITVLS----DDKVSVP 55

Query: 477 WFPRRIRDLDRFANQILSYGAELDSDHP 560
           WFPR+I DLD+FA+++LSYGAELDSDHP
Sbjct: 56  WFPRKISDLDKFADRVLSYGAELDSDHP 83


>SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 63/237 (26%), Positives = 102/237 (43%), Gaps = 4/237 (1%)
 Frame = +3

Query: 195 EGRDSTKSTWLLISPAAPDEAGSLARYLGIFSSHGVNLSHIESR-SSTRRPGYEFMVECE 371
           EG    K+T ++ S    +E G+LAR L +F  H VN++HIESR S   +  Y+F  +CE
Sbjct: 23  EGESEKKATTVVFS--LNEEVGALARALKLFEDHHVNMTHIESRPSKACKTRYDFFADCE 80

Query: 372 --HGSGDFGAALEELKKNVGYLNIISRNYKDNRSAVPWFPRRIRDLDRFANQILSYGAEL 545
             HG+      ++ LKK    + ++S + K + S   + P +   L     Q ++  +  
Sbjct: 81  GLHGA-SLNHFVDALKKRAVNITVLSDD-KGSVSHPSYLPSQSSQL---VTQSVTPVSHP 135

Query: 546 DSDHPGFTDPVYRDRRKYFADIAYNYKHGEPLPYVEYTKEEVATWGVVFRKLTELYPTHA 725
                  T  V +   +          H    P         +   +V + +T +  +H 
Sbjct: 136 SQSPQSVTQSVTQSVTQLVTQSVTPVSHPSQSPQSVTQSVTQSVTQLVTQSVTPV--SHP 193

Query: 726 CKEHNHVFPLLIENCGYRDDHIPQLEDVSNFL-RDSTGFTLRXGAGXLSSRXFLAGL 893
            +    V P+           + Q  + +  +  + TGFTLR  AG LSSR FLAGL
Sbjct: 194 SQSPQSVTPV-----SSVTKSVTQCSNTNVIVFSECTGFTLRPVAGLLSSRDFLAGL 245


>SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)
          Length = 1667

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 20/74 (27%), Positives = 28/74 (37%)
 Frame = -3

Query: 804 LPIVECGRPCNHSFRSAAGRHGCALCRHEWGRALSTSGKLHPRWPPPLWCTPHKAEALRA 625
           L  +  G P  H  R     + CA C H+  +      +   + P P    P+     R 
Sbjct: 49  LSSISYGVPQGHLARKTPRDYPCA-CAHDTDQPSDPCQRTADQKPYPTQRDPYPGAGKRL 107

Query: 624 CSCMQCRRNICGGR 583
           CS   C R+  GGR
Sbjct: 108 CSDDGCHRHSMGGR 121


>SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084)
          Length = 292

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 581 PRPPQIFRRHCIQLQARRASALCGVH--QRGGGHLGCSFPEVDRALPHSCLQ 730
           P P + +R  C+Q   RR+  +  VH   R    + C +P + R+   SC+Q
Sbjct: 18  PSPRRSYRVSCVQPSPRRSYRVSCVHPSPRRSYRVSCVYPSLRRSYRVSCVQ 69



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +2

Query: 566 YR-SCL-PRPPQIFRRHCIQLQARRASALCGVH--QRGGGHLGCSFPEVDRALPHSCLQ 730
           YR SC+ P P + +R  C+Q   RR+  +  VH   R    + C  P   R    SC+Q
Sbjct: 167 YRVSCVQPSPRRSYRVSCVQPSPRRSYRVSCVHPSPRRSYQVSCVQPSPKRCYRVSCVQ 225


>SB_48827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = +3

Query: 339 RPGYEFMVECEHGSGDFGAALEELKKNVG--YLNIISRNYKDNRSAVPWFPRRIRDLDRF 512
           RP    +V CEH  GD   +   + K V   Y +II   Y+           +   +D  
Sbjct: 169 RPSMVVVVACEHDLGDVNGSARVMVKEVSKQYCDIIISTYEPTEEGQ---RDKQLGIDGL 225

Query: 513 ANQILSYGAEL-DSDHPGFTDPVYRDRRK 596
            N +LS   ++ D+ H    D VY+D R+
Sbjct: 226 TNYLLSKEGDIFDTAH----DKVYQDMRQ 250


>SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 561 QGDQSPVRHRMR-GSGWRSDLSRGYDVGTKEQRIDYLYSFSK 439
           +G Q PV  R   G+ W S+  + Y++GT++ R + LY  SK
Sbjct: 395 RGMQGPVGLRGTVGARWTSEALQSYELGTQKTRENRLYRSSK 436


>SB_14470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
 Frame = +3

Query: 249 DEAGSLARYLGIFSSHGVNLSHIESRSSTRRPGYEF--MVECEHG----SGDFGAALEEL 410
           DE     RY    +   VNLSH+++ +ST R   EF  +V+ E      S +F +  +E 
Sbjct: 172 DEEPPRPRYSSNSTRFTVNLSHLKT-NSTDRLALEFVSVVKSEESMPSCSREFQSIDDEH 230

Query: 411 KKNVGYLNIISRNYKDNRSAVPWFPRRIRDLDR 509
              +    +I+  Y    S + W P     LDR
Sbjct: 231 SPGIFRTVVINNTYATYSSFISWKPVMYTKLDR 263


>SB_21967| Best HMM Match : BAG (HMM E-Value=1.7e-18)
          Length = 336

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 681 PRWPPPLWCTP--HKAEALRACSCMQCRRNIC 592
           P WP P W  P   + E+ RA S   CRR+ C
Sbjct: 36  PDWPTPFWDFPLTMEDESPRAQSATSCRRHGC 67


>SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5)
          Length = 563

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 771 HSFRSAAGRHGCALCRHEWGRALSTSGKLHPRWPPPLWCTPHKAEALRACS 619
           HSF+ A  R G + C   WGR + +  K  P +      +    EA + C+
Sbjct: 244 HSFKGAVTRTGRSRCWDGWGRTMVSPVKFRPTFVQVCSLSRSVREAWQRCN 294


>SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 671 GHLGCSFPEVDRALPHSCLQRAQPCLPAADRKLWLQGRPHSTI 799
           G++GC     D  +P+SC    +P  P  + +LW  G P + I
Sbjct: 544 GNVGCVITFKDEEMPNSC----KPRFPRPEVELWRNGGPFAGI 582


>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
          Length = 939

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/88 (22%), Positives = 40/88 (45%)
 Frame = +3

Query: 78  TPLPATEKEMDITAKQIEQPTSGSPPDKPKLMEGGNYIREGRDSTKSTWLLISPAAPDEA 257
           T  PA E   +    + ++  S S  D  + +     + +G+D+ K    L+SP +P  +
Sbjct: 528 TETPADEPGTNADPTRAQKGRSESVYDLKEFLTMARTLPKGKDAGKQNAHLLSPKSPKPS 587

Query: 258 GSLARYLGIFSSHGVNLSHIESRSSTRR 341
           GS  +   I+  +   L+ ++  +  RR
Sbjct: 588 GSQTKRESIYDLNEF-LAILQKEADRRR 614


>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 781

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 836 AGAISQKVRNIFQLWNVVVPVTTVFDQQREDMVVLFAGMSGVELCQLPENYTPG 675
           A  +++ + N      + V ++T   Q  E +V LF  + G+++C L  NY  G
Sbjct: 189 AAQVAESIANSHTPMRLFVIISTAVTQ--EQVVRLFDIIPGMQVCDLKRNYNTG 240


>SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)
          Length = 1076

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 189 IREGRDSTKSTWLLISPAAPDEAGSLARYLGIFSSHGVNLSHIE 320
           + EGR       LL++  APDE  S ARY+GI  + G ++  ++
Sbjct: 9   LHEGRIRQDDNQLLVAQYAPDEYLS-ARYIGIGKTMGPDVRWVD 51


>SB_40255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 134 LFNLLRRDVHFFFCCWKRRVFSA*VTYVNQNLK 36
           ++N +  D+HF  CC+K+ +  A V + N N +
Sbjct: 52  VYNSIILDIHFPSCCYKKLLSPAVVPFHNPNAR 84


>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
          Length = 231

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 25/94 (26%), Positives = 39/94 (41%)
 Frame = +1

Query: 511 SPTRSSHTVPNWTLITLDLPILFTATAANISPTLHTTTSTESLCLMWSTPKRRWPPGV*F 690
           +PT S    P++T  T   P     +  + +PT   T++T        TP   + P    
Sbjct: 69  TPTTSYTPTPSYTPTTSYTPTPSYTSTTSYTPTTSYTSTTSYTPTPSYTPTPSYTP---- 124

Query: 691 SGS*QSSTPLMPAKSTTMSSRC*SKTVVTGTTTF 792
           + S  S+T   P  S T +    S T  T TT++
Sbjct: 125 TPSYTSTTSYTPTTSYTPTPSYTSTTSYTSTTSY 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,751,332
Number of Sequences: 59808
Number of extensions: 716422
Number of successful extensions: 2370
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2363
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)