Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C17
         (893 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26460.1 68415.m03175 RED family protein similar to Red prote...    32   0.59 
At1g11790.1 68414.m01353 prephenate dehydratase family protein s...    31   1.0  
At1g76160.1 68414.m08844 multi-copper oxidase type I family prot...    29   3.1  
At1g11000.1 68414.m01263 seven transmembrane MLO family protein ...    29   3.1  
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi...    29   3.1  
At1g67140.1 68414.m07638 expressed protein                             29   5.5  
At1g28380.1 68414.m03487 expressed protein                             29   5.5  
At1g23300.1 68414.m02914 MATE efflux family protein similar to r...    29   5.5  
At3g45830.1 68416.m04960 expressed protein                             28   7.3  
At3g03773.1 68416.m00384 expressed protein                             28   7.3  

>At2g26460.1 68415.m03175 RED family protein similar to Red protein
           (RER protein) (Swiss-Prot:Q9Z1M8) [Mus musculus]
          Length = 585

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 81  PLPATEKEMDITAKQIEQPTSGSPPDKPKLMEGGNYIREGRDSTKS 218
           PLP     +D++ KQ E P + +  D   + EG +Y   G+D T+S
Sbjct: 266 PLPPGINHLDLSTKQEEPPVARTDDDDIFVGEGVDYTVPGKDVTQS 311


>At1g11790.1 68414.m01353 prephenate dehydratase family protein
           similar to gi|2392772 and is a member of the PF|00800
           Prephenate dehydratase family. ESTs gb|T21562 and
           gb|T21062 come from this gene
          Length = 392

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 258 GSLARYLGIFSSHGVNLSHIESRSSTRRP 344
           G L + L +F+   +NLS IESR   RRP
Sbjct: 306 GVLFKALAVFALRSINLSKIESRPQRRRP 334


>At1g76160.1 68414.m08844 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 541

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +2

Query: 41  DFGLHKSLTLRTHASSSNRKRNG----HHGEAN*TTHVWLASRQAKIDGR 178
           D+ L+++  +RT+ S+S  + N     H+G  N T  + LAS   ++DG+
Sbjct: 313 DWSLNQARAIRTNLSASGPRPNPQGSYHYGMINTTRTIRLASSAGQVDGK 362


>At1g11000.1 68414.m01263 seven transmembrane MLO family protein /
           MLO-like protein 4 (MLO4) identical to membrane protein
           Mlo4 [Arabidopsis thaliana] gi|14091578|gb|AAK53797;
           similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]
          Length = 573

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 41  DFGLHKSLTLRTHASSSNRKRNGHHG 118
           D+G+HK + L  H SS+N+    HHG
Sbjct: 101 DYGIHKKVLLE-HTSSTNQSSLPHHG 125


>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
            protein low similarity to SP|P46825 Kinesin light chain
            (KLC) {Loligo pealeii}; contains Pfam profile PF00515:
            TPR Domain
          Length = 1797

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
 Frame = +3

Query: 360  VECEHGSGDFGAALEELKKNVGYLNIISRNYKDNRSAVPWFPRRIRDLDRF---ANQILS 530
            V+    +G +G  +++ + ++G +    +   +     P F    +  D++     +  S
Sbjct: 1252 VQRPRSAGSYGRRMKQRRASIGKVYTYQKKNVEADIDNPLFQNATQQNDKYYILKKRTAS 1311

Query: 531  YGAELDSDHPGFTDPVYRDRRKYFADIAYNYKHGEP 638
            Y +  D   PG T    +  RK    +AY  K  +P
Sbjct: 1312 YSSYADHHSPGLTTQGTKFGRKIVKTLAYRVKSTQP 1347


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 683  CSFPEVDRALPHSCLQRAQPCLPAA 757
            CSF  +D  LPH+  +R QPCL  A
Sbjct: 1282 CSF--LDEILPHTVSRRLQPCLEEA 1304


>At1g28380.1 68414.m03487 expressed protein
          Length = 612

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = +3

Query: 78  TPLPATEK-EMDITAKQIEQPTSGSPPDKPKLME--GGNYIREGRDSTKSTWLLISPAAP 248
           +P PAT K +  I       P   SPP KPKL+       +  G +     W++      
Sbjct: 529 SPNPATTKPQSKIDINSAVYPRGPSPPVKPKLLSLVDTKEVMRGPEEQPGYWVVTGAKLC 588

Query: 249 DEAGSLA 269
            EAG ++
Sbjct: 589 VEAGKIS 595


>At1g23300.1 68414.m02914 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 515

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 96  EKEMDITAKQIEQPTSGSPPDKPKLMEGGNYIREGRDSTKSTWLLISPA 242
           + E  I+++Q  +  + S  D P +  G ++IR+    +K  W L  PA
Sbjct: 7   DHEDTISSEQEHRAHTKSDTDMPPISGGRDFIRQFAAESKKLWWLAGPA 55


>At3g45830.1 68416.m04960 expressed protein
          Length = 1298

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 354 FMVECEHGSGDFGAALEELKKNVGYLNIISRNYKDN 461
           F +E  HGSGD  ++ EE +KN    N+ S +  D+
Sbjct: 13  FDLEYSHGSGDSMSSYEERRKNSVVNNVDSEDEDDD 48


>At3g03773.1 68416.m00384 expressed protein
          Length = 150

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 387 FGAALEELKKNVGYLNIISRNYKDNRSAVPWFPRRIRDLDRFANQI 524
           +G  + E +KNVG  NII    K+ RS   W+ R ++  ++ A  I
Sbjct: 57  YGKIMTEYRKNVGLRNIIFSIQKEERS---WWTRLLKSEEKPAPYI 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,585,631
Number of Sequences: 28952
Number of extensions: 513731
Number of successful extensions: 1609
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)