Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C16
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.52 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.69 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   4.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 854 PPPPPGXXXFXFXXPPPPP 910
           PPPPPG        PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 853 PPPXPXXXXXXXXGPPXPPP 912
           PPP P        GPP PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 854 PPPPPGXXXFXFXXPPPPP 910
           PPPPP         PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 854 PPPPPGXXXFXFXXPPPPP 910
           PPPPPG        PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 854 PPPPPGXXXFXFXXPPPPP 910
           PPPPP    F     PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 854 PPPPPGXXXFXFXXPPPPP 910
           PPPPP         PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 854 PPPPPGXXXFXFXXPPPPP 910
           PPPPP         PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 203  FSEEDCIRQGGICVRTEECDPDNISTISQFLCP 301
            FS  DC RQ  I +   E   D  ST+  F+CP
Sbjct: 1381 FSFVDCTRQITIYLAKTELLSDLYSTLLSFVCP 1413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,389
Number of Sequences: 5004
Number of extensions: 44905
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)