Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_C16
(912 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1363 - 29576265-29577575 33 0.42
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.7
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 30 2.2
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654... 30 2.2
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 30 2.9
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 29 6.8
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 29 6.8
01_05_0423 + 22032940-22033695 29 6.8
11_01_0359 - 2731522-2732346 28 9.0
08_02_1256 + 25645085-25645396 28 9.0
05_03_0414 + 13650483-13651388,13651559-13651657 28 9.0
04_01_0600 + 7907142-7908047,7908218-7908316 28 9.0
04_01_0595 + 7840842-7841345,7841518-7841748,7841919-7842017 28 9.0
02_02_0037 - 6260171-6260382,6260657-6260723 28 9.0
>06_03_1363 - 29576265-29577575
Length = 436
Score = 32.7 bits (71), Expect = 0.42
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 812 PGXGXXXFXXXXXXPPPPPGXXXFXFXXPPPPP 910
PG G PPPPP + PPPPP
Sbjct: 378 PGGGKVLIVDVTPPPPPPPAARRESWAAPPPPP 410
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP F PPPPP
Sbjct: 550 PPPPPSGNKPAFSPPPPPP 568
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 621 PPPPPPLPNHSVLPPPPPP 639
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 912 GGGGGGXXXXXXXXPGGGGG 853
GGGGGG PGGGGG
Sbjct: 94 GGGGGGGSSMQQQQPGGGGG 113
>04_01_0500 -
6540769-6541482,6541819-6541877,6541965-6542064,
6542113-6542322,6542507-6542765,6544022-6544215
Length = 511
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPPG PPPPP
Sbjct: 36 PPPPPGPLQRRSSLPPPPP 54
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP + PPPPP
Sbjct: 112 PPPPPPHLLHYYGHPPPPP 130
Score = 29.1 bits (62), Expect = 5.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP + PPPPP
Sbjct: 113 PPPPPHLLHYYGHPPPPPP 131
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 67 PPPPPAAFFAAVPPPPPPP 85
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 224 PPPPPSPHRHPAAHPPPPP 242
>01_05_0423 + 22032940-22033695
Length = 251
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPP 907
PPPP G F PPPP
Sbjct: 169 PPPPQGQQQLLFLPPPPP 186
>11_01_0359 - 2731522-2732346
Length = 274
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 52 PPPPPPHAYHHHHYPPPPP 70
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 53 PPPPPHAYHHHHYPPPPPP 71
>08_02_1256 + 25645085-25645396
Length = 103
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 61 PPPPPPPPPLPSPPPPPPP 79
>05_03_0414 + 13650483-13651388,13651559-13651657
Length = 334
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +2
Query: 194 QTPFSEEDCIRQGGICVRTEECDPDNISTISQFLCPNQAHLGVAC 328
+ P ++ +R G+ ++ CD + + ++QFL P A + + C
Sbjct: 2 ELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDC 46
>04_01_0600 + 7907142-7908047,7908218-7908316
Length = 334
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +2
Query: 194 QTPFSEEDCIRQGGICVRTEECDPDNISTISQFLCPNQAHLGVAC 328
+ P ++ +R G+ ++ CD + + ++QFL P A + + C
Sbjct: 2 ELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDC 46
>04_01_0595 + 7840842-7841345,7841518-7841748,7841919-7842017
Length = 277
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +2
Query: 194 QTPFSEEDCIRQGGICVRTEECDPDNISTISQFLCPNQAHLGVAC 328
+ P ++ +R G+ ++ CD + + ++QFL P A + + C
Sbjct: 2 ELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDC 46
>02_02_0037 - 6260171-6260382,6260657-6260723
Length = 92
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +2
Query: 116 KMKLIQCVFVIVLLMAVTVCSSPLLTQTPFSEEDCIRQGGICVRTEECD 262
K+ V V++L++A + ++ Q E+ G+C+R++ CD
Sbjct: 6 KLSSSAVVLVLLLVVATEMTGMVVVVQARLCEKPSSHFKGLCLRSQNCD 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,558,197
Number of Sequences: 37544
Number of extensions: 427249
Number of successful extensions: 4283
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3278
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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