Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_C16
(912 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 31 1.3
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 31 1.3
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 30 2.3
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 30 2.3
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 30 2.3
SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_31555| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 30 3.0
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 29 5.2
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) 28 9.1
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPPG PPPPP
Sbjct: 357 PPPPPGRAPQPLGGPPPPP 375
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPPG PPPPP
Sbjct: 269 PPPPPGRAPQPLGGPPPPP 287
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 30.3 bits (65), Expect = 2.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPP 907
PPPPPG F PPPP
Sbjct: 425 PPPPPGFPQFQPPPPPPP 442
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 30.3 bits (65), Expect = 2.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP F PPPPP
Sbjct: 197 PPPPPPPPGFPGGAPPPPP 215
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 30.3 bits (65), Expect = 2.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP F PPPPP
Sbjct: 64 PPPPPPRRGFYDDYPPPPP 82
Score = 29.1 bits (62), Expect = 5.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP + PPPPP
Sbjct: 50 PPPPPPPRFYDNDIPPPPP 68
Score = 29.1 bits (62), Expect = 5.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP + PPPPP
Sbjct: 65 PPPPPRRGFYDDYPPPPPP 83
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 30.3 bits (65), Expect = 2.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPPG PPPPP
Sbjct: 664 PPPPPGGQAGGAPPPPPPP 682
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPPG F PPPPP
Sbjct: 653 PPPPPGGGMFP-PPPPPPP 670
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +1
Query: 805 PXPGGGXXXXXXXXXXPPPXPXXXXXXXXGPPXPPP 912
P PGGG PPP P GPP PPP
Sbjct: 655 PPPGGGMF--------PPPPPPPPGGGVPGPPKPPP 682
>SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 30.3 bits (65), Expect = 2.3
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = -1
Query: 318 PRCAWFGHRNCEIVDMLSGSHSSVRTHIPPCLMQSSSLNGVCVSKGLLHTVTAISKTMTK 139
P +F H E+ + + + + CL+ + L +CV KG+ + + T T
Sbjct: 136 PSAYYFYHHALEVSTSIEDTGVGINVKLAGCLVFAWILTYLCVVKGIKSSGKVVYFTATF 195
Query: 138 THCISFIFNFLGV 100
+ I I F GV
Sbjct: 196 PYIILIILFFRGV 208
>SB_31555| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1063
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -1
Query: 213 SSLNGVCVSKGLLHTVTAISKTMTKTHCISFIF 115
SS N C+ G T IS THC+ IF
Sbjct: 736 SSNNNTCIRTGFFSKYTCISYIRLHTHCVVIIF 768
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 330 QQATPRCAWFGHRNCEIVDMLSGSHSSVRTHIPPCLMQSSSL 205
Q+ P C+ RN E L S S+++ PCL S S+
Sbjct: 1182 QKVAPLCSGSAERNLEGSPRLQASDSTMKAEETPCLPHSGSI 1223
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPPG PPPPP
Sbjct: 306 PPPPPGGAPPPPPPPPPPP 324
Score = 28.3 bits (60), Expect = 9.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 292 PPPPPADGSAPAPPPPPPP 310
>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
Length = 330
Score = 28.3 bits (60), Expect = 9.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 311 PPPPPPEPTSELPPPPPPP 329
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,275,322
Number of Sequences: 59808
Number of extensions: 393210
Number of successful extensions: 1719
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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